Literature DB >> 28571940

Image Analysis in Plant Sciences: Publish Then Perish.

Guillaume Lobet1.   

Abstract

Image analysis has become a powerful technique for most plant scientists. In recent years dozens of image analysis tools have been published in plant science journals. These tools cover the full spectrum of plant scales, from single cells to organs and canopies. However, the field of plant image analysis remains in its infancy. It still has to overcome important challenges, such as the lack of robust validation practices or the absence of long-term support. In this Opinion article, I: (i) present the current state of the field, based on data from the plant-image-analysis.org database; (ii) identify the challenges faced by its community; and (iii) propose workable ways of improvement.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  image analysis; maintenance; open data; open science; validation

Mesh:

Year:  2017        PMID: 28571940     DOI: 10.1016/j.tplants.2017.05.002

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  24 in total

1.  MyROOT: a method and software for the semiautomatic measurement of primary root length in Arabidopsis seedlings.

Authors:  Isabel Betegón-Putze; Alejandro González; Xavier Sevillano; David Blasco-Escámez; Ana I Caño-Delgado
Journal:  Plant J       Date:  2019-04-06       Impact factor: 6.417

2.  Description of olive morphological parameters by using open access software.

Authors:  Konstantinos N Blazakis; Maria Kosma; George Kostelenos; Luciana Baldoni; Marina Bufacchi; Panagiotis Kalaitzis
Journal:  Plant Methods       Date:  2017-12-11       Impact factor: 4.993

3.  PlantCV v2: Image analysis software for high-throughput plant phenotyping.

Authors:  Malia A Gehan; Noah Fahlgren; Arash Abbasi; Jeffrey C Berry; Steven T Callen; Leonardo Chavez; Andrew N Doust; Max J Feldman; Kerrigan B Gilbert; John G Hodge; J Steen Hoyer; Andy Lin; Suxing Liu; César Lizárraga; Argelia Lorence; Michael Miller; Eric Platon; Monica Tessman; Tony Sax
Journal:  PeerJ       Date:  2017-12-01       Impact factor: 2.984

4.  MowJoe: a method for automated-high throughput dissected leaf phenotyping.

Authors:  Henrik Failmezger; Janne Lempe; Nasim Khadem; Maria Cartolano; Miltos Tsiantis; Achim Tresch
Journal:  Plant Methods       Date:  2018-03-26       Impact factor: 4.993

5.  ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture.

Authors:  Nicolás Gaggion; Federico Ariel; Vladimir Daric; Éric Lambert; Simon Legendre; Thomas Roulé; Alejandra Camoirano; Diego H Milone; Martin Crespi; Thomas Blein; Enzo Ferrante
Journal:  Gigascience       Date:  2021-07-20       Impact factor: 6.524

6.  Wheat Spike Blast Image Classification Using Deep Convolutional Neural Networks.

Authors:  Mariela Fernández-Campos; Yu-Ting Huang; Mohammad R Jahanshahi; Tao Wang; Jian Jin; Darcy E P Telenko; Carlos Góngora-Canul; C D Cruz
Journal:  Front Plant Sci       Date:  2021-06-17       Impact factor: 5.753

7.  Improved non-destructive 2D and 3D X-ray imaging of leaf venation.

Authors:  Julio V Schneider; Renate Rabenstein; Jens Wesenberg; Karsten Wesche; Georg Zizka; Jörg Habersetzer
Journal:  Plant Methods       Date:  2018-01-19       Impact factor: 4.993

8.  Using image analysis for quantitative assessment of needle bladder rust disease of Norway spruce.

Authors:  A Ganthaler; A Losso; S Mayr
Journal:  Plant Pathol       Date:  2018-03-01       Impact factor: 2.590

9.  Quantitative assessment of disease severity and rating of barley cultivars based on hyperspectral imaging in a non-invasive, automated phenotyping platform.

Authors:  Stefan Thomas; Jan Behmann; Angelina Steier; Thorsten Kraska; Onno Muller; Uwe Rascher; Anne-Katrin Mahlein
Journal:  Plant Methods       Date:  2018-06-08       Impact factor: 4.993

10.  A "Do-It-Yourself" phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants.

Authors:  Andrei Dobrescu; Livia C T Scorza; Sotirios A Tsaftaris; Alistair J McCormick
Journal:  Plant Methods       Date:  2017-11-08       Impact factor: 4.993

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