Literature DB >> 28557980

E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.

Maia A Smith1,2, Cydney B Nielsen2,3, Fong Chun Chan2, Andrew McPherson2, Andrew Roth2, Hossein Farahani2, Daniel Machev2, Adi Steif2, Sohrab P Shah2,3.   

Abstract

Entities:  

Mesh:

Year:  2017        PMID: 28557980     DOI: 10.1038/nmeth.4303

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


× No keyword cloud information.
  6 in total

1.  Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.

Authors:  Peter Eirew; Adi Steif; Jaswinder Khattra; Gavin Ha; Damian Yap; Hossein Farahani; Karen Gelmon; Stephen Chia; Colin Mar; Adrian Wan; Emma Laks; Justina Biele; Karey Shumansky; Jamie Rosner; Andrew McPherson; Cydney Nielsen; Andrew J L Roth; Calvin Lefebvre; Ali Bashashati; Camila de Souza; Celia Siu; Radhouane Aniba; Jazmine Brimhall; Arusha Oloumi; Tomo Osako; Alejandra Bruna; Jose L Sandoval; Teresa Algara; Wendy Greenwood; Kaston Leung; Hongwei Cheng; Hui Xue; Yuzhuo Wang; Dong Lin; Andrew J Mungall; Richard Moore; Yongjun Zhao; Julie Lorette; Long Nguyen; David Huntsman; Connie J Eaves; Carl Hansen; Marco A Marra; Carlos Caldas; Sohrab P Shah; Samuel Aparicio
Journal:  Nature       Date:  2014-11-26       Impact factor: 49.962

2.  Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.

Authors:  Andrew McPherson; Andrew Roth; Emma Laks; Tehmina Masud; Ali Bashashati; Allen W Zhang; Gavin Ha; Justina Biele; Damian Yap; Adrian Wan; Leah M Prentice; Jaswinder Khattra; Maia A Smith; Cydney B Nielsen; Sarah C Mullaly; Steve Kalloger; Anthony Karnezis; Karey Shumansky; Celia Siu; Jamie Rosner; Hector Li Chan; Julie Ho; Nataliya Melnyk; Janine Senz; Winnie Yang; Richard Moore; Andrew J Mungall; Marco A Marra; Alexandre Bouchard-Côté; C Blake Gilks; David G Huntsman; Jessica N McAlpine; Samuel Aparicio; Sohrab P Shah
Journal:  Nat Genet       Date:  2016-05-16       Impact factor: 38.330

3.  Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.

Authors:  Li Ding; Timothy J Ley; David E Larson; Christopher A Miller; Daniel C Koboldt; John S Welch; Julie K Ritchey; Margaret A Young; Tamara Lamprecht; Michael D McLellan; Joshua F McMichael; John W Wallis; Charles Lu; Dong Shen; Christopher C Harris; David J Dooling; Robert S Fulton; Lucinda L Fulton; Ken Chen; Heather Schmidt; Joelle Kalicki-Veizer; Vincent J Magrini; Lisa Cook; Sean D McGrath; Tammi L Vickery; Michael C Wendl; Sharon Heath; Mark A Watson; Daniel C Link; Michael H Tomasson; William D Shannon; Jacqueline E Payton; Shashikant Kulkarni; Peter Westervelt; Matthew J Walter; Timothy A Graubert; Elaine R Mardis; Richard K Wilson; John F DiPersio
Journal:  Nature       Date:  2012-01-11       Impact factor: 49.962

4.  The evolutionary history of lethal metastatic prostate cancer.

Authors:  Christopher Foster; Douglas Easton; Ultan McDermott; David C Wedge; G Steven Bova; Gunes Gundem; Peter Van Loo; Barbara Kremeyer; Ludmil B Alexandrov; Jose M C Tubio; Elli Papaemmanuil; Daniel S Brewer; Heini M L Kallio; Gunilla Högnäs; Matti Annala; Kati Kivinummi; Victoria Goody; Calli Latimer; Sarah O'Meara; Kevin J Dawson; William Isaacs; Michael R Emmert-Buck; Matti Nykter; Zsofia Kote-Jarai; Hayley C Whitaker; David E Neal; Colin S Cooper; Rosalind A Eeles; Tapio Visakorpi; Peter J Campbell
Journal:  Nature       Date:  2015-04-01       Impact factor: 49.962

5.  Clonal evolution in breast cancer revealed by single nucleus genome sequencing.

Authors:  Yong Wang; Jill Waters; Marco L Leung; Anna Unruh; Whijae Roh; Xiuqing Shi; Ken Chen; Paul Scheet; Selina Vattathil; Han Liang; Asha Multani; Hong Zhang; Rui Zhao; Franziska Michor; Funda Meric-Bernstam; Nicholas E Navin
Journal:  Nature       Date:  2014-07-30       Impact factor: 49.962

6.  Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study.

Authors:  Robert Kridel; Fong Chun Chan; Anja Mottok; Merrill Boyle; Pedro Farinha; King Tan; Barbara Meissner; Ali Bashashati; Andrew McPherson; Andrew Roth; Karey Shumansky; Damian Yap; Susana Ben-Neriah; Jamie Rosner; Maia A Smith; Cydney Nielsen; Eva Giné; Adele Telenius; Daisuke Ennishi; Andrew Mungall; Richard Moore; Ryan D Morin; Nathalie A Johnson; Laurie H Sehn; Thomas Tousseyn; Ahmet Dogan; Joseph M Connors; David W Scott; Christian Steidl; Marco A Marra; Randy D Gascoyne; Sohrab P Shah
Journal:  PLoS Med       Date:  2016-12-13       Impact factor: 11.069

  6 in total
  13 in total

1.  CALDER: Inferring Phylogenetic Trees from Longitudinal Tumor Samples.

Authors:  Matthew A Myers; Gryte Satas; Benjamin J Raphael
Journal:  Cell Syst       Date:  2019-06-19       Impact factor: 10.304

2.  Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing.

Authors:  Anna K Casasent; Aislyn Schalck; Ruli Gao; Emi Sei; Annalyssa Long; William Pangburn; Tod Casasent; Funda Meric-Bernstam; Mary E Edgerton; Nicholas E Navin
Journal:  Cell       Date:  2018-01-04       Impact factor: 41.582

3.  Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing.

Authors:  Charissa Kim; Ruli Gao; Emi Sei; Rachel Brandt; Johan Hartman; Thomas Hatschek; Nicola Crosetto; Theodoros Foukakis; Nicholas E Navin
Journal:  Cell       Date:  2018-04-19       Impact factor: 41.582

4.  Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution.

Authors:  Noemi Andor; Billy T Lau; Claudia Catalanotti; Anuja Sathe; Matthew Kubit; Jiamin Chen; Cristina Blaj; Athena Cherry; Charles D Bangs; Susan M Grimes; Carlos J Suarez; Hanlee P Ji
Journal:  NAR Genom Bioinform       Date:  2020-03-14

Review 5.  Using single-cell multiple omics approaches to resolve tumor heterogeneity.

Authors:  Michael A Ortega; Olivier Poirion; Xun Zhu; Sijia Huang; Thomas K Wolfgruber; Robert Sebra; Lana X Garmire
Journal:  Clin Transl Med       Date:  2017-12-28

6.  clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers.

Authors:  Kieran R Campbell; Adi Steif; Emma Laks; Hans Zahn; Daniel Lai; Andrew McPherson; Hossein Farahani; Farhia Kabeer; Ciara O'Flanagan; Justina Biele; Jazmine Brimhall; Beixi Wang; Pascale Walters; Alexandre Bouchard-Côté; Samuel Aparicio; Sohrab P Shah
Journal:  Genome Biol       Date:  2019-03-12       Impact factor: 13.583

Review 7.  Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics.

Authors:  Anna S Nam; Ronan Chaligne; Dan A Landau
Journal:  Nat Rev Genet       Date:  2020-08-17       Impact factor: 53.242

8.  Comparative analysis of clonal evolution among patients with right- and left-sided colon and rectal cancer.

Authors:  Santasree Banerjee; Xianxiang Zhang; Shan Kuang; Jigang Wang; Lei Li; Guangyi Fan; Yonglun Luo; Shuai Sun; Peng Han; Qingyao Wu; Shujian Yang; Xiaobin Ji; Yong Li; Li Deng; Xiaofen Tian; Zhiwei Wang; Yue Zhang; Kui Wu; Shida Zhu; Lars Bolund; Huanming Yang; Xun Xu; Junnian Liu; Yun Lu; Xin Liu
Journal:  iScience       Date:  2021-06-11

9.  ClonArch: visualizing the spatial clonal architecture of tumors.

Authors:  Jiaqi Wu; Mohammed El-Kebir
Journal:  Bioinformatics       Date:  2020-07-01       Impact factor: 6.937

10.  In Silico Drug Prescription for Targeting Cancer Patient Heterogeneity and Prediction of Clinical Outcome.

Authors:  Elena Piñeiro-Yáñez; María José Jiménez-Santos; Gonzalo Gómez-López; Fátima Al-Shahrour
Journal:  Cancers (Basel)       Date:  2019-09-13       Impact factor: 6.639

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.