Literature DB >> 28550014

Distributions of Mutational Effects and the Estimation of Directional Selection in Divergent Lineages of Arabidopsis thaliana.

Briton Park1, Matthew T Rutter2, Charles B Fenster3, V Vaughan Symonds4, Mark C Ungerer5, Jeffrey P Townsend6,7,8.   

Abstract

Mutations are crucial to evolution, providing the ultimate source of variation on which natural selection acts. Due to their key role, the distribution of mutational effects on quantitative traits is a key component to any inference regarding historical selection on phenotypic traits. In this paper, we expand on a previously developed test for selection that could be conducted assuming a Gaussian mutation effect distribution by developing approaches to also incorporate any of a family of heavy-tailed Laplace distributions of mutational effects. We apply the test to detect directional natural selection on five traits along the divergence of Columbia and Landsberg lineages of Arabidopsis thaliana, constituting the first test for natural selection in any organism using quantitative trait locus and mutation accumulation data to quantify the intensity of directional selection on a phenotypic trait. We demonstrate that the results of the test for selection can depend on the mutation effect distribution specified. Using the distributions exhibiting the best fit to mutation accumulation data, we infer that natural directional selection caused divergence in the rosette diameter and trichome density traits of the Columbia and Landsberg lineages.
Copyright © 2017 by the Genetics Society of America.

Entities:  

Keywords:  mutation accumulation; neutrality; phenotype; statistical tests

Mesh:

Year:  2017        PMID: 28550014      PMCID: PMC5560809          DOI: 10.1534/genetics.116.199190

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  53 in total

1.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

Review 2.  The fixation probability of beneficial mutations.

Authors:  Z Patwa; L M Wahl
Journal:  J R Soc Interface       Date:  2008-11-06       Impact factor: 4.118

Review 3.  The repeatability of genome-wide mutation rate and spectrum estimates.

Authors:  Megan G Behringer; David W Hall
Journal:  Curr Genet       Date:  2016-02-26       Impact factor: 3.886

Review 4.  It's about time: the temporal dynamics of phenotypic selection in the wild.

Authors:  Adam M Siepielski; Joseph D DiBattista; Stephanie M Carlson
Journal:  Ecol Lett       Date:  2009-09-08       Impact factor: 9.492

5.  Do large effect QTL fractionate? A case study at the maize domestication QTL teosinte branched1.

Authors:  Anthony J Studer; John F Doebley
Journal:  Genetics       Date:  2011-04-21       Impact factor: 4.562

6.  Nautural selection for within-generation variance in offspring number.

Authors:  J H Gillespie
Journal:  Genetics       Date:  1974-03       Impact factor: 4.562

7.  Effect of short term directional selection on genetic variability: experiments with Drosophila melanogaster.

Authors:  D A Sorensen; W G Hill
Journal:  Heredity (Edinb)       Date:  1982-02       Impact factor: 3.821

8.  The mutation matrix and the evolution of evolvability.

Authors:  Adam G Jones; Stevan J Arnold; Reinhard Bürger
Journal:  Evolution       Date:  2007-04       Impact factor: 3.694

9.  The distribution of mutation effects on viability in Drosophila melanogaster.

Authors:  P D Keightley
Journal:  Genetics       Date:  1994-12       Impact factor: 4.562

10.  Understanding the evolutionary fate of finite populations: the dynamics of mutational effects.

Authors:  Olin K Silander; Olivier Tenaillon; Lin Chao
Journal:  PLoS Biol       Date:  2007-04       Impact factor: 8.029

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  2 in total

1.  Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae.

Authors:  Andrea Hodgins-Davis; Fabien Duveau; Elizabeth A Walker; Patricia J Wittkopp
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

2.  Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi.

Authors:  Zsolt Merényi; Arun N Prasanna; Zheng Wang; Károly Kovács; Botond Hegedüs; Balázs Bálint; Balázs Papp; Jeffrey P Townsend; László G Nagy
Journal:  Mol Biol Evol       Date:  2020-08-01       Impact factor: 16.240

  2 in total

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