| Literature DB >> 28537227 |
Qian Li1, Tangxin Gao1, Yuncang Yuan1, Yanrui Wu2, Qionglin Huang1, Fei Xie1, Pengzhan Ran1, Lijuan Sun1, Chunjie Xiao1.
Abstract
BACKGROUND The CYP17A1 gene encodes for cytochrome P450 enzyme CYP17A1, which is involved with the steroidogenic pathway including mineralocorticoids. The CYP17A1 polymorphisms might affect enzyme activity, then leading to a state of mineralocorticoid 11-deoxycorticosterone excess characterized by hypertension, suppressed plasma renin activity, and low aldosterone concentrations. The aim of this study was to investigate the contribution of CYP17A1 polymorphisms in inducing the susceptibility to essential hypertension among the Southwest Han Chinese population. MATERIAL AND METHODS Eight single nucleotide polymorphisms of CYP17A1 were genotyped in a case-control study for samples by polymerase chain reaction-restriction fragment length polymorphism analysis. RESULTS The polymorphisms rs11191548 and rs4919687 were significantly associated with hypertension risk, which was confirmed by systolic and diastolic blood pressure distribution analyses between different genotype groups, and these two polymorphisms were found in linkage disequilibrium. The rs4919687 polymorphism was estimated to cause the destruction of exonic splicing silencer (ESR and Motif 3) sites and to transform the transcription factor AREB6 binding site, respectively, in the bioinformatics analyses. The haplotypes rs4919686A-rs3740397G -rs4919687C-rs743572C-rs11191548C and rs4919686A-rs3740397G-rs4919687T-rs743572C- rs11191548T were found to be susceptible to essential hypertension. CONCLUSIONS Our findings suggest that the CYP17A1 polymorphisms could be a genetic risk factor for essential hypertension among the Yunnan Han Chinese population, which would have implications for the treatment of this complex disorder.Entities:
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Year: 2017 PMID: 28537227 PMCID: PMC5450854 DOI: 10.12659/msm.902109
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
The tag SNPs of CYP17A1 gene.
| Tag SNP | Captured SNP |
|---|---|
| rs743572 | rs10786712 rs6163 rs6162 rs3781287 rs743572 |
| rs1004467 | rs17115100 rs3824755 rs1004467 |
| rs4919687 | rs10883783 rs4919687 |
| rs755443 | rs755443 |
| rs3740397 | rs3740397 |
| rs4919686 | rs4919686 |
| rs762563 | rs762563 |
The r2 of each Tag SNP with its captured SNPs were more than 0.8.
Figure 1CYP17A1 (cytochrome P450, family 17, subfamily A, polypeptide 1) structure and relative position of 8 tag SNPs. Black boxes indicate exons, lines indicate introns, and gray boxes indicate 5′-UTR and 3′-UTR.
Oligonucleotides and restriction enzymes of polymorphic sites for genotyping.
| Locus | Location | Long PCR | Nest PCR | Restriction enzyme | Digested bands (bp) | ||
|---|---|---|---|---|---|---|---|
| Primer sequence (5′–3′) | TA | Primer sequence (5′–3′) | TB | ||||
| rs4919686 | Intron6 | F: GTCAGGGACAGAAGTATGGC | 56°C | F: TGACCGTAACCGTCTCCTC | 56°C | NmuCI | A: 122, 208; C: 330 |
| R: TGGATGAGTCAATGCGTGT | 56°C | R: GCTGGTCTTGAACCCCTG | 56°C | ||||
| rs3740397 | Intron5 | F: GTCAGGGACAGAAGTATGGC | 56°C | F: AACCACATTCTCACCACCATAG | 57°C | MunI | G: 172, 75; C: 247 |
| R: TGGATGAGTCAATGCGTGT | 56°C | R: GGGTCAAAGCCAACTACTGC | 57°C | ||||
| rs1004467 | Intron3 | F: GAGTTGCCTTCCTGTGGTC | 56°C | F: CTGTCTTCGTGGCGGTAAC | 56°C | RsaI | T: 19, 193 |
| R: CAGCGATGAATGCGTATAGA | 56°C | R: GGGGACAATGTCAGGGTGT | 56°C | ||||
| rs755443 | Intron2 | F: GAGTTGCCTTCCTGTGGTC | 56°C | F: CAAGGATGGCGATCAGAAG | 56°C | HapII | G: 190,20 |
| R: CAGCGATGAATGCGTATAGA | 56°C | R: CAGTTGCCTCTTAACAGGACC | 56°C | ||||
| rs4919687 | Intron1 | F: GAGTTGCCTTCCTGTGGTC | 56°C | F: AGGGTCTGTCCTACCAAGTCC | 57°C | Kpn I | C: 153, 81; T: 234 |
| R: CAGCGATGAATGCGTATAGA | 56°C | R: AGAGTCAGCGAAGGCGATAC | 57°C | ||||
| rs762563 | Exon1 | F: CCCTGAAATGTCATTGTAGAAA | 56°C | F: GGGGTACTTGGCACCATG | 56°C | Nco I | C: 16,177; G: 193 |
| R: CCCAGATACCATTCGCACT | 56°C | R: GTCAAGGTGAAGATCAGGGTAG | 56°C | ||||
| rs743572 | 5′ UTR | F: CCCTGAAATGTCATTGTAGAAA | 56°C | F: GCAGGCAAGATAGACCGC | 56°C | Acc II | C: 194,7 |
| R: CCCAGATACCATTCGCACT | 56°C | R: AGTTGAGCCAGCCCTTGA | 56°C | ||||
| rs11191548 | 5′near | F: TTCTTGTTACGGGAGGTGC | 56°C | F: TGCAGGGTTGCTCTGGTA | 56°C | Tai I | C: 65,276 |
| R: TGAGAAGACCATTCTGCCAC | 56°C | R: ACCACGAATAGCCTGAGACA | 56°C | ||||
F – forward primer; R – reverse primer; TA – temperature of long-PCR annealing; TB – the temperature of nest-PCR annealing.
The basic characteristics of the Yunnan Han Chinese population.
| Parameters | Normotensive | Hypertensive | |
|---|---|---|---|
| Number | 510.00 | 510.00 | --- |
| Males (%) | 65.69 | 65.69 | 1.000 |
| Age (years) | 53.46±10.44 | 53.81±10.23 | 0.588 |
| Current smokers (%) | 38.82 | 37.84 | 0.747 |
| Current drinkers (%) | 26.47 | 27.45 | 0.724 |
| SBP (mm HG) | 111.5±11.09 | 147.92±20.67 | <0.001 |
| DBP (mm HG) | 73.53±7.07 | 94.75±13.04 | <0.001 |
| BMI (Kg/m2) | 22.98±2.79 | 24.64±2.81 | <0.001 |
SBP – systolic blood pressure; DBP – diastolic blood pressure; BMI – body mass index. Data were presented as mean±standard deviation. p-value was calculated on comparison on hypertension cases and controls and p<0.05 was considered statistical significance.
Exact test for Hardy-Weinberg equilibrium (n=1009).
| Region | Variant | Allele | Case-hypertensive | Control-normotensive | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MAF | 1/1 | 1/2 | 2/2 | MAF | 1/1 | 1/2 | 2/2 | |||||
| Intron_6 | rs4919686 | A/C | 0.170 | 348 | 141 | 15 | 0.871 | 0.144 | 370 | 125 | 10 | 1 |
| Intron_5 | rs3740397 | C/G | 0.480 | 142 | 240 | 122 | 0.332 | 0.505 | 127 | 246 | 132 | 0.590 |
| Intron_3 | rs1004467 | T/C | 0.361 | 244 | 156 | 104 | <0.0001 | 0.432 | 197 | 180 | 128 | <0.0001 |
| Intron_2 | rs755443 | G/A | 0.031 | 475 | 27 | 2 | 0.074 | 0.000 | 499 | 6 | 0 | 1 |
| Intron_1 | rs4919687 | C/T | 0.273 | 261 | 211 | 32 | 0.260 | 0.245 | 292 | 179 | 34 | 0.401 |
| Exon_1 | rs762563 | C/G | 0.003 | 502 | 1 | 1 | 0.003 | 0.004 | 503 | 0 | 2 | <0.0001 |
| 5′ UTR | rs743572 | C/T | 0.439 | 163 | 240 | 101 | 0.473 | 0.416 | 177 | 236 | 92 | 0.411 |
| 5′ near | rs11191548 | T/C | 0.241 | 280 | 205 | 19 | 0.014 | 0.305 | 243 | 216 | 46 | 0.920 |
MAF – minor allele frequency. p-value >0.05 was considered to be consistent with Hardy-Weinberg equilibrium.
1 represented major allele, 2 represented minor allele.
The associations between minor-alleles of CYP17A1 SNPs and the risk of EH and BP levels.
| SNP | Allele | MAF | Risk of minor allele | SBP | DBP | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Control | Case | OR | 95% CI | MD | 95% CI | MD | 95% CI | |||||
| rs4919686 | A/C | 0.144 | 0.170 | 1.298 | 1.008–1.673 | 0.0435 | 2.657 | −0.157–5.471 | 0.0642 | 0.550 | −1.150–2.250 | 0.5256 |
| rs3740397 | C/G | 0.505 | 0.480 | 0.886 | 0.738–1.064 | 0.1959 | −1.038 | −3.082–1.006 | 0.3194 | −1.273 | −2.506–(−0.040) | 0.0430 |
| rs4919687 | C/T | 0.245 | 0.273 | 1.283 | 1.040–1.583 | 3.045 | 0.712–5.378 | 0.976 | −0.434–2.386 | 0.1748 | ||
| rs743572 | C/T | 0.416 | 0.439 | 1.096 | 0.911–1.318 | 0.3308 | 0.713 | −1.351–2.778 | 0.4980 | 1.321 | 0.076–2.566 | 0.0376 |
| rs11191548 | T/C | 0.305 | 0.241 | 0.675 | 0.549–0.830 | −3.354 | −5.642–(−1.066) | −1.917 | −3.299–(−0.536) | |||
SBP – systolic blood pressure; DBP – diastolic blood pressure; MAF – minor allele frequency; MD – mean difference. MD and 95% confidence intervals (CI) were analyzed by ANCOVA between the groups with different alleles; odds ratio (OR) and 95% CI were analyzed by logistic regression between the case and control groups; p<0.05 was considered statistical significance.
1 represented major allele, 2 represented minor allele;
adjusted for sex, age and BMI;
indicated that the p-value remained significant after Boferroni correction (p<0.05/5).
The associations of 5 SNPs with the BP levels in this population.
| SNP | Genotype | N | SBP | DBP | ||
|---|---|---|---|---|---|---|
| rs4919686 | AA | 718 | 128.91±24.54 | 83.73±14.84 | ||
| AC+CC | 291 | 131.93±23.59 | 0.064 | 84.33±14.26 | 0.547 | |
| rs3740397 | CC | 269 | 132.09±24.01 | 85.88±14.47 | ||
| CG+GG | 740 | 129.02±24.13 | 0.067 | 83.23±14.53 | 0.080 | |
| rs4919687 | CC | 553 | 127.69±24.15 | 83.42±14.63 | ||
| CT+TT | 456 | 132.34±23.85 | 85.04±14.46 | 0.071 | ||
| rs743572 | CC | 340 | 129.64±23.90 | 83.04±14.42 | ||
| CT+TT | 669 | 129.90±24.26 | 0.870 | 84.35±14.64 | 0.163 | |
| rs11191548 | TT | 523 | 131.17±24.13 | 85.04±14.57 | ||
| TC+CC | 486 | 128.10±23.94 | 83.19±14.46 |
SBP – systolic blood pressure; DBP – diastolic blood pressure. Continuous variables were expressed as the mean ±S.D. p-value <0.05was considered statistical significance.
Adjusted for age, gender and BMI;
indicated that the p-value remained significant after Bonferroni correction.
The associations of 5 SNPs with the hypertension risk in this population.
| SNP | Allele | Model | Genotype status | n=1009 | |
|---|---|---|---|---|---|
| OR | |||||
| rs4919686 | A/C | Codominant | 1/1 | 1.00 | 0.1300 |
| 1/2 | 1.29 (0.96–1.73) | ||||
| 2/2 | 1.77 (0.75–4.18) | ||||
| Dominant | 1/1 | 1.00 | 0.0580 | ||
| 1/2–2/2 | 1.32 (0.99–1.76) | ||||
| Recessive | 1/1–1/2 | 1.00 | 0.2400 | ||
| 2/2 | 1.65 (0.70–3.87) | ||||
| Overdominant | 1/1–2/2 | 1.00 | 0.1200 | ||
| 1/2 | 1.26 (0.94–1.69) | ||||
| Log-additive | --- | 1.30 (1.01–1.68) | 0.0430 | ||
| rs3740397 | C/G | Codominant | 1/1 | 1.00 | 0.4100 |
| 1/2 | 0.85 (0.62–1.16) | ||||
| 2/2 | 0.79 (0.55–1.14) | ||||
| Dominant | 1/1 | 1.00 | 0.2100 | ||
| 1/2–2/2 | 0.83 (0.62–1.11) | ||||
| Recessive | 1/1–1/2 | 1.00 | 0.4100 | ||
| 2/2 | 0.88 (0.65–1.19) | ||||
| Overdominant | 1/1–2/2 | 1.00 | 0.6800 | ||
| 1/2 | 0.95 (0.73–1.23) | ||||
| Log-additive | --- | 0.89 (0.74–1.07) | 0.2000 | ||
| rs4919687 | C/T | Codominant | 1/1 | 1.00 | |
| 1/2 | 1.53 (1.16–2.01) | ||||
| 2/2 | 1.20 (0.70–2.05) | ||||
| Dominant | 1/1 | 1.00 | |||
| 1/2–2/2 | 1.47 (1.13–1.92) | ||||
| Recessive | 1/1–1/2 | 1.00 | 0.9900 | ||
| 2/2 | 1.00 (0.59–1.69) | ||||
| Overdominant | 1/1–2/2 | 1.00 | 0.0320 | ||
| 1/2 | 1.50 (1.14–1.96) | ||||
| Log-additive | --- | 1.29 (1.04–1.59) | 0.0190 | ||
| rs743572 | C/T | Codominant | 1/1 | 1.00 | 0.5800 |
| 1/2 | 1.15 (0.86–1.54) | ||||
| 2/2 | 1.18 (0.81–1.70) | ||||
| Dominant | 1/1 | 1.00 | 0.3000 | ||
| 1/2–2/2 | 1.16 (0.88–1.52) | ||||
| Recessive | 1/1–1/2 | 1.00 | 0.6200 | ||
| 2/2 | 1.09 (0.78–1.51) | ||||
| Overdominant | 1/1–2/2 | 1.00 | 0.5600 | ||
| 1/2 | 1.08 (0.83–1.40) | ||||
| Log-additive | --- | 1.09 (0.91–1.31) | 0.3400 | ||
| rs11191548 | T/C | Codominant | 1/1 | 1.00 | |
| 1/2 | 0.76 (0.58–1.00) | ||||
| 2/2 | 0.31 (0.17–0.55) | ||||
| Dominant | 1/1 | 1.00 | |||
| 1/2–2/2 | 0.68 (0.52–0.88) | ||||
| Recessive | 1/1–1/2 | 1.00 | |||
| 2/2 | 0.35 (0.19–0.62) | ||||
| Overdominant | 1/1–2/2 | 1.00 | 0.2600 | ||
| 1/2 | 0.86 (0.66–1.12) | ||||
| Log-additive | --- | 0.66 (0.53–0.81) | |||
OR – odd ratio; CI – confidence interval. Note: OR and 95% CI was calculated by logistic regression analysis model; p-value<0.05 was considered statistical significance.
1 represented major allele, 2 represented minor allele;
estimated by logistic regression analysis adjusted for sex, age and BMI;
Indicated that the p-value remained significant after Bonferroni correction.
Figure 2Linkage disequilibrium analysis of SNPs localized in the CYP17A1 gene in the control group. The rs11191548 and rs4919687 were in linkage disequilibrium (/D’/=0.82) in the control group.
Figure 3Linkage disequilibrium analysis of SNPs localized in the CYP17A1 gene in the case group. The rs11191548 and rs4919687 were in linkage disequilibrium (/D’/=0.92) in the case group.
Associations between the CYP17A1 gene haplotypes and the hypertension risk in this population.
| Name | Haplotype | n=1009 | ||
|---|---|---|---|---|
| Frequence | OR (95 CI%) | |||
| H1 | ACCTT | 0.3977 | 1.00 | --- |
| H2 | AGCCC | 0.2558 | 0.68 (0.53–0.86) | |
| H3 | CGTCT | 0.1454 | 1.17 (0.87–1.56) | 0.3000 |
| H4 | ACTCT | 0.0734 | 0.95 (0.66–1.38) | 0.7900 |
| H5 | AGCCT | 0.0597 | 0.87 (0.58–1.29) | 0.4800 |
| H6 | AGTCT | 0.0176 | 4.27 (1.77–10.29) | |
| H7 | ACTTT | 0.0119 | 0.66 (0.25–1.74) | 0.4000 |
| H8 | ACCCT | 0.0116 | 1.69 (0.68–4.22) | 0.2600 |
CI – confidence interval; OR – odds ratio; SNP – single-nucleotide polymorphism. Note: The SNP order of constructing haplotype was as follows: rs4919686(A/C), rs3740397(C/G), rs4919687(C/T), rs743572(C/T), rs11191548(T/C); OR and 95% CI were calculated by a haplotype-based logistic regression analysis. Haplotypes with frequencies<0.01 were not included in this table; p-value<0.05 was considered statistical significance.
Indicated that the p-value remained significant after Bonferroni correction (p<0.05/8).