Literature DB >> 28535712

Dissimilarity for functional data clustering based on smoothing parameter commutation.

ShengLi Tzeng1, Christian Hennig2, Yu-Fen Li1, Chien-Ju Lin3.   

Abstract

Many studies measure the same type of information longitudinally on the same subject at multiple time points, and clustering of such functional data has many important applications. We propose a novel and easy method to implement dissimilarity measure for functional data clustering based on smoothing splines and smoothing parameter commutation. This method handles data observed at regular or irregular time points in the same way. We measure the dissimilarity between subjects based on varying curve estimates with pairwise commutation of smoothing parameters. The intuition is that smoothing parameters of smoothing splines reflect the inverse of the signal-to-noise ratios and that when applying an identical smoothing parameter the smoothed curves for two similar subjects are expected to be close. Our method takes into account the estimation uncertainty using smoothing parameter commutation and is not strongly affected by outliers. It can also be used for outlier detection. The effectiveness of our proposal is shown by simulations comparing it to other dissimilarity measures and by a real application to methadone dosage maintenance levels.

Entities:  

Keywords:  Clustering; dissimilarity; functional data; irregular longitudinal data; outliers; smoothing splines

Mesh:

Substances:

Year:  2017        PMID: 28535712      PMCID: PMC5723154          DOI: 10.1177/0962280217710050

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  3 in total

1.  Shape outlier detection and visualization for functional data: the outliergram.

Authors:  Ana Arribas-Gil; Juan Romo
Journal:  Biostatistics       Date:  2014-03-11       Impact factor: 5.899

2.  A robust measure of correlation between two genes on a microarray.

Authors:  Johanna Hardin; Aya Mitani; Leanne Hicks; Brian VanKoten
Journal:  BMC Bioinformatics       Date:  2007-06-25       Impact factor: 3.169

3.  A Comparative Evaluation of Unsupervised Anomaly Detection Algorithms for Multivariate Data.

Authors:  Markus Goldstein; Seiichi Uchida
Journal:  PLoS One       Date:  2016-04-19       Impact factor: 3.240

  3 in total

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