Literature DB >> 24622037

Shape outlier detection and visualization for functional data: the outliergram.

Ana Arribas-Gil1, Juan Romo2.   

Abstract

We propose a new method to visualize and detect shape outliers in samples of curves. In functional data analysis, we observe curves defined over a given real interval and shape outliers may be defined as those curves that exhibit a different shape from the rest of the sample. Whereas magnitude outliers, that is, curves that lie outside the range of the majority of the data, are in general easy to identify, shape outliers are often masked among the rest of the curves and thus difficult to detect. In this article, we exploit the relationship between two measures of depth for functional data to help to visualize curves in terms of shape and to develop an algorithm for shape outlier detection. We illustrate the use of the visualization tool, the outliergram, through several examples and analyze the performance of the algorithm on a simulation study. Finally, we apply our method to assess cluster quality in a real set of time course microarray data.
© The Author 2014. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Keywords:  Depth for functional data; Outlier visualization; Robust estimation; Time course microarray data

Mesh:

Year:  2014        PMID: 24622037     DOI: 10.1093/biostatistics/kxu006

Source DB:  PubMed          Journal:  Biostatistics        ISSN: 1465-4644            Impact factor:   5.899


  4 in total

1.  Dissimilarity for functional data clustering based on smoothing parameter commutation.

Authors:  ShengLi Tzeng; Christian Hennig; Yu-Fen Li; Chien-Ju Lin
Journal:  Stat Methods Med Res       Date:  2017-05-24       Impact factor: 3.021

2.  Concurrent measurement of cerebral hemodynamics and electroencephalography during transcranial direct current stimulation.

Authors:  Martina Giovannella; David Ibañez; Clara Gregori-Pla; Michal Kacprzak; Guillem Mitjà; Giulio Ruffini; Turgut Durduran
Journal:  Neurophotonics       Date:  2018-01-25       Impact factor: 3.593

3.  Is it time to stop sweeping data cleaning under the carpet? A novel algorithm for outlier management in growth data.

Authors:  Charlotte S C Woolley; Ian G Handel; B Mark Bronsvoort; Jeffrey J Schoenebeck; Dylan N Clements
Journal:  PLoS One       Date:  2020-01-24       Impact factor: 3.240

4.  Depthgram: Visualizing outliers in high-dimensional functional data with application to fMRI data exploration.

Authors:  Yasser Alemán-Gómez; Ana Arribas-Gil; Manuel Desco; Antonio Elías; Juan Romo
Journal:  Stat Med       Date:  2022-02-03       Impact factor: 2.497

  4 in total

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