Literature DB >> 28527455

Uncertainty quantification and propagation of errors of the Lennard-Jones 12-6 parameters for n-alkanes.

Richard A Messerly1, Thomas A Knotts1, W Vincent Wilding1.   

Abstract

Molecular simulation has the ability to predict various physical properties that are difficult to obtain experimentally. For example, we implement molecular simulation to predict the critical constants (i.e., critical temperature, critical density, critical pressure, and critical compressibility factor) for large n-alkanes that thermally decompose experimentally (as large as C48). Historically, molecular simulation has been viewed as a tool that is limited to providing qualitative insight. One key reason for this perceived weakness in molecular simulation is the difficulty to quantify the uncertainty in the results. This is because molecular simulations have many sources of uncertainty that propagate and are difficult to quantify. We investigate one of the most important sources of uncertainty, namely, the intermolecular force field parameters. Specifically, we quantify the uncertainty in the Lennard-Jones (LJ) 12-6 parameters for the CH4, CH3, and CH2 united-atom interaction sites. We then demonstrate how the uncertainties in the parameters lead to uncertainties in the saturated liquid density and critical constant values obtained from Gibbs Ensemble Monte Carlo simulation. Our results suggest that the uncertainties attributed to the LJ 12-6 parameters are small enough that quantitatively useful estimates of the saturated liquid density and the critical constants can be obtained from molecular simulation.

Entities:  

Year:  2017        PMID: 28527455      PMCID: PMC5438279          DOI: 10.1063/1.4983406

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Comparison of united-atom potentials for the simulation of vapor-liquid equilibria and interfacial properties of long-chain n-alkanes up to n-C100.

Authors:  Erich A Müller; Andrés Mejía
Journal:  J Phys Chem B       Date:  2011-10-17       Impact factor: 2.991

2.  An improved statistical analysis for predicting the critical temperature and critical density with Gibbs ensemble Monte Carlo simulation.

Authors:  Richard A Messerly; Richard L Rowley; Thomas A Knotts; W Vincent Wilding
Journal:  J Chem Phys       Date:  2015-09-14       Impact factor: 3.488

3.  Accurate and precise determination of critical properties from Gibbs ensemble Monte Carlo simulations.

Authors:  Mohammadhasan Dinpajooh; Peng Bai; Douglas A Allan; J Ilja Siepmann
Journal:  J Chem Phys       Date:  2015-09-21       Impact factor: 3.488

4.  Properties of Organic Liquids when Simulated with Long-Range Lennard-Jones Interactions.

Authors:  Nina M Fischer; Paul J van Maaren; Jonas C Ditz; Ahmet Yildirim; David van der Spoel
Journal:  J Chem Theory Comput       Date:  2015-06-02       Impact factor: 6.006

5.  Mie potentials for phase equilibria calculations: application to alkanes and perfluoroalkanes.

Authors:  Jeffrey J Potoff; Damien A Bernard-Brunel
Journal:  J Phys Chem B       Date:  2009-11-05       Impact factor: 2.991

6.  Statistical approaches to forcefield calibration and prediction uncertainty in molecular simulation.

Authors:  Fabien Cailliez; Pascal Pernot
Journal:  J Chem Phys       Date:  2011-02-07       Impact factor: 3.488

7.  Determining force field parameters using a physically based equation of state.

Authors:  Thijs van Westen; Thijs J H Vlugt; Joachim Gross
Journal:  J Phys Chem B       Date:  2011-05-31       Impact factor: 2.991

8.  Parametric sensitivity analysis for stochastic molecular systems using information theoretic metrics.

Authors:  Anastasios Tsourtis; Yannis Pantazis; Markos A Katsoulakis; Vagelis Harmandaris
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

9.  Bayesian uncertainty quantification and propagation in molecular dynamics simulations: a high performance computing framework.

Authors:  Panagiotis Angelikopoulos; Costas Papadimitriou; Petros Koumoutsakos
Journal:  J Chem Phys       Date:  2012-10-14       Impact factor: 3.488

10.  Interatomic Lennard-Jones potentials of linear and branched alkanes calibrated by Gibbs ensemble simulations for vapor-liquid equilibria.

Authors:  Jaeeon Chang; Stanley I Sandler
Journal:  J Chem Phys       Date:  2004-10-15       Impact factor: 3.488

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  2 in total

1.  Atomic Radius and Charge Parameter Uncertainty in Biomolecular Solvation Energy Calculations.

Authors:  Xiu Yang; Huan Lei; Peiyuan Gao; Dennis G Thomas; David L Mobley; Nathan A Baker
Journal:  J Chem Theory Comput       Date:  2018-01-29       Impact factor: 6.006

2.  Molecular Calculation of the Critical Parameters of Classical Helium.

Authors:  Richard A Messerly; Navneeth Gokul; Andrew J Schultz; David A Kofke; Allan H Harvey
Journal:  J Chem Eng Data       Date:  2019       Impact factor: 2.694

  2 in total

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