Literature DB >> 21303109

Statistical approaches to forcefield calibration and prediction uncertainty in molecular simulation.

Fabien Cailliez1, Pascal Pernot.   

Abstract

Calibration of forcefields for molecular simulation should account for the measurement uncertainty of the reference dataset and for the model inadequacy, i.e., the inability of the force-field/simulation pair to reproduce experimental data within their uncertainty range. In all rigour, the resulting uncertainty of calibrated force-field parameters is a source of uncertainty for simulation predictions. Various calibration strategies and calibration models within the Bayesian calibration/prediction framework are explored in the present article. In the case of Lennard-Jones potential for Argon, we show that prediction uncertainty for thermodynamical and transport properties, albeit very small, is larger than statistical simulation uncertainty.

Entities:  

Year:  2011        PMID: 21303109     DOI: 10.1063/1.3545069

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Toward Learned Chemical Perception of Force Field Typing Rules.

Authors:  Camila Zanette; Caitlin C Bannan; Christopher I Bayly; Josh Fass; Michael K Gilson; Michael R Shirts; John D Chodera; David L Mobley
Journal:  J Chem Theory Comput       Date:  2018-12-24       Impact factor: 6.006

2.  Uncertainty quantification and propagation of errors of the Lennard-Jones 12-6 parameters for n-alkanes.

Authors:  Richard A Messerly; Thomas A Knotts; W Vincent Wilding
Journal:  J Chem Phys       Date:  2017-05-21       Impact factor: 3.488

3.  Data driven inference for the repulsive exponent of the Lennard-Jones potential in molecular dynamics simulations.

Authors:  Lina Kulakova; Georgios Arampatzis; Panagiotis Angelikopoulos; Panagiotis Hadjidoukas; Costas Papadimitriou; Petros Koumoutsakos
Journal:  Sci Rep       Date:  2017-11-29       Impact factor: 4.379

4.  Benchmark assessment of molecular geometries and energies from small molecule force fields.

Authors:  Victoria T Lim; David F Hahn; Gary Tresadern; Christopher I Bayly; David L Mobley
Journal:  F1000Res       Date:  2020-12-03

5.  An Efficient and Accurate Formalism for the Treatment of Large Amplitude Intramolecular Motion.

Authors:  Guillaume Reinisch; Kenji Miki; Gérard L Vignoles; Bryan M Wong; Chris S Simmons
Journal:  J Chem Theory Comput       Date:  2012-06-12       Impact factor: 6.006

6.  Evaluation of solvation free energies for small molecules with the AMOEBA polarizable force field.

Authors:  Noor Asidah Mohamed; Richard T Bradshaw; Jonathan W Essex
Journal:  J Comput Chem       Date:  2016-10-19       Impact factor: 3.376

  6 in total

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