Literature DB >> 28524181

Common pitfalls in preclinical cancer target validation.

William G Kaelin1.   

Abstract

An alarming number of papers from laboratories nominating new cancer drug targets contain findings that cannot be reproduced by others or are simply not robust enough to justify drug discovery efforts. This problem probably has many causes, including an underappreciation of the danger of being misled by off-target effects when using pharmacological or genetic perturbants in complex biological assays. This danger is particularly acute when, as is often the case in cancer pharmacology, the biological phenotype being measured is a 'down' readout (such as decreased proliferation, decreased viability or decreased tumour growth) that could simply reflect a nonspecific loss of cellular fitness. These problems are compounded by multiple hypothesis testing, such as when candidate targets emerge from high-throughput screens that interrogate multiple targets in parallel, and by a publication and promotion system that preferentially rewards positive findings. In this Perspective, I outline some of the common pitfalls in preclinical cancer target identification and some potential approaches to mitigate them.

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Year:  2017        PMID: 28524181     DOI: 10.1038/nrc.2017.32

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  36 in total

1.  Drug development: Raise standards for preclinical cancer research.

Authors:  C Glenn Begley; Lee M Ellis
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

2.  RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells.

Authors:  Ralf Kittler; Laurence Pelletier; Chunling Ma; Ina Poser; Steffi Fischer; Anthony A Hyman; Frank Buchholz
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-03       Impact factor: 11.205

3.  The hypoxia-induced paralogs Scylla and Charybdis inhibit growth by down-regulating S6K activity upstream of TSC in Drosophila.

Authors:  Jan H Reiling; Ernst Hafen
Journal:  Genes Dev       Date:  2004-11-15       Impact factor: 11.361

4.  Regulation of mTOR function in response to hypoxia by REDD1 and the TSC1/TSC2 tumor suppressor complex.

Authors:  James Brugarolas; Kui Lei; Rebecca L Hurley; Brendan D Manning; Jan H Reiling; Ernst Hafen; Lee A Witters; Leif W Ellisen; William G Kaelin
Journal:  Genes Dev       Date:  2004-11-15       Impact factor: 11.361

5.  Immune cell-mediated antitumor activities of GD2-targeted liposomal c-myb antisense oligonucleotides containing CpG motifs.

Authors:  Chiara Brignole; Fabio Pastorino; Danilo Marimpietri; Gabriella Pagnan; Angela Pistorio; Theresa M Allen; Vito Pistoia; Mirco Ponzoni
Journal:  J Natl Cancer Inst       Date:  2004-08-04       Impact factor: 13.506

6.  Using transcriptome sequencing to identify mechanisms of drug action and resistance.

Authors:  Sarah A Wacker; Benjamin R Houghtaling; Olivier Elemento; Tarun M Kapoor
Journal:  Nat Chem Biol       Date:  2012-02-12       Impact factor: 15.040

7.  Making sense of replications.

Authors:  Brian A Nosek; Timothy M Errington
Journal:  Elife       Date:  2017-01-19       Impact factor: 8.140

8.  (R)-2-hydroxyglutarate is sufficient to promote leukemogenesis and its effects are reversible.

Authors:  Julie-Aurore Losman; Ryan E Looper; Peppi Koivunen; Sungwoo Lee; Rebekka K Schneider; Christine McMahon; Glenn S Cowley; David E Root; Benjamin L Ebert; William G Kaelin
Journal:  Science       Date:  2013-02-07       Impact factor: 47.728

9.  Overcoming mutation-based resistance to antiandrogens with rational drug design.

Authors:  Minna D Balbas; Michael J Evans; David J Hosfield; John Wongvipat; Vivek K Arora; Philip A Watson; Yu Chen; Geoffrey L Greene; Yang Shen; Charles L Sawyers
Journal:  Elife       Date:  2013-04-09       Impact factor: 8.140

10.  An open investigation of the reproducibility of cancer biology research.

Authors:  Timothy M Errington; Elizabeth Iorns; William Gunn; Fraser Elisabeth Tan; Joelle Lomax; Brian A Nosek
Journal:  Elife       Date:  2014-12-10       Impact factor: 8.140

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  52 in total

1.  N6-methyladenine DNA Modification in Glioblastoma.

Authors:  Qi Xie; Tao P Wu; Ryan C Gimple; Zheng Li; Briana C Prager; Qiulian Wu; Yang Yu; Pengcheng Wang; Yinsheng Wang; David U Gorkin; Cheng Zhang; Alexis V Dowiak; Kaixuan Lin; Chun Zeng; Yinghui Sui; Leo J Y Kim; Tyler E Miller; Li Jiang; Christine H Lee; Zhi Huang; Xiaoguang Fang; Kui Zhai; Stephen C Mack; Maike Sander; Shideng Bao; Amber E Kerstetter-Fogle; Andrew E Sloan; Andrew Z Xiao; Jeremy N Rich
Journal:  Cell       Date:  2018-11-01       Impact factor: 41.582

2.  Predictors of Success of Phase II Pediatric Oncology Clinical Trials.

Authors:  Laura Franshaw; Maria Tsoli; Jennifer Byrne; Chelsea Mayoh; Siva Sivarajasingam; Murray Norris; Glenn M Marshall; David S Ziegler
Journal:  Oncologist       Date:  2019-02-26

3.  HIF activation causes synthetic lethality between the VHL tumor suppressor and the EZH1 histone methyltransferase.

Authors:  Abhishek A Chakraborty; Eijiro Nakamura; Jun Qi; Amanda Creech; Jacob D Jaffe; Joshiawa Paulk; Jesse S Novak; Kshithija Nagulapalli; Samuel K McBrayer; Glenn S Cowley; Javier Pineda; Jiaxi Song; Yaoyu E Wang; Steven A Carr; David E Root; Sabina Signoretti; James E Bradner; William G Kaelin
Journal:  Sci Transl Med       Date:  2017-07-12       Impact factor: 17.956

4.  Progress in Kidney Cancer Outcomes Through Collaboration, Innovation, and Discovery.

Authors:  David F McDermott; Michael Carducci
Journal:  J Clin Oncol       Date:  2018-10-29       Impact factor: 44.544

5.  Precision oncology in the era of radiogenomics: the case of D-2HG as an imaging biomarker for mutant IDH gliomas.

Authors:  Ovidiu C Andronesi
Journal:  Neuro Oncol       Date:  2018-06-18       Impact factor: 12.300

6.  Hif1α Deletion Limits Tissue Regeneration via Aberrant B Cell Accumulation in Experimental Pancreatitis.

Authors:  Kyoung Eun Lee; Michelle Spata; Richard Maduka; Robert H Vonderheide; M Celeste Simon
Journal:  Cell Rep       Date:  2018-06-19       Impact factor: 9.423

Review 7.  Epigenetic regulation by endogenous metabolite pharmacology.

Authors:  Rhushikesh A Kulkarni; David C Montgomery; Jordan L Meier
Journal:  Curr Opin Chem Biol       Date:  2019-03-15       Impact factor: 8.822

Review 8.  Hypoxia inducible factor (HIF) in the tumor microenvironment: friend or foe?

Authors:  Yanqing Huang; Daniel Lin; Cullen M Taniguchi
Journal:  Sci China Life Sci       Date:  2017-10-13       Impact factor: 6.038

Review 9.  Pharmacological Modulation of Transcriptional Coregulators in Cancer.

Authors:  Timothy R Bishop; Yuxiang Zhang; Michael A Erb
Journal:  Trends Pharmacol Sci       Date:  2019-05-08       Impact factor: 14.819

Review 10.  Advances in the Diagnosis and Treatment of Large Granular Lymphocytic Leukemia.

Authors:  HeeJin Cheon; Karolina H Dziewulska; Katharine B Moosic; Kristine C Olson; Alejandro A Gru; David J Feith; Thomas P Loughran
Journal:  Curr Hematol Malig Rep       Date:  2020-04       Impact factor: 3.952

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