Literature DB >> 28523290

Complex modular architecture around a simple toolkit of wing pattern genes.

Steven M Van Belleghem1,2, Pasi Rastas3, Alexie Papanicolaou4, Simon H Martin3, Carlos F Arias2,5, Megan A Supple2, Joseph J Hanly3, James Mallet6, James J Lewis7, Heather M Hines8, Mayte Ruiz1, Camilo Salazar5, Mauricio Linares5, Gilson R P Moreira9, Chris D Jiggins3, Brian A Counterman10, W Owen McMillan2, Riccardo Papa1.   

Abstract

Identifying the genomic changes that control morphological variation and understanding how they generate diversity is a major goal of evolutionary biology. In Heliconius butterflies, a small number of genes control the development of diverse wing color patterns. Here, we used full genome sequencing of individuals across the Heliconius erato radiation and closely related species to characterize genomic variation associated with wing pattern diversity. We show that variation around color pattern genes is highly modular, with narrow genomic intervals associated with specific differences in color and pattern. This modular architecture explains the diversity of color patterns and provides a flexible mechanism for rapid morphological diversification.

Entities:  

Year:  2017        PMID: 28523290      PMCID: PMC5432014          DOI: 10.1038/s41559-016-0052

Source DB:  PubMed          Journal:  Nat Ecol Evol        ISSN: 2397-334X            Impact factor:   15.460


  71 in total

1.  Disruptive sexual selection against hybrids contributes to speciation between Heliconius cydno and Heliconius melpomene.

Authors:  R E Naisbit; C D Jiggins; J Mallet
Journal:  Proc Biol Sci       Date:  2001-09-07       Impact factor: 5.349

2.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

3.  Estimation of levels of gene flow from DNA sequence data.

Authors:  R R Hudson; M Slatkin; W P Maddison
Journal:  Genetics       Date:  1992-10       Impact factor: 4.562

4.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Authors:  Brian J Haas; Arthur L Delcher; Stephen M Mount; Jennifer R Wortman; Roger K Smith; Linda I Hannick; Rama Maiti; Catherine M Ronning; Douglas B Rusch; Christopher D Town; Steven L Salzberg; Owen White
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

5.  Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.

Authors:  Bastien Chevreux; Thomas Pfisterer; Bernd Drescher; Albert J Driesel; Werner E G Müller; Thomas Wetter; Sándor Suhai
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043

6.  De novo identification of repeat families in large genomes.

Authors:  Alkes L Price; Neil C Jones; Pavel A Pevzner
Journal:  Bioinformatics       Date:  2005-06       Impact factor: 6.937

Review 7.  Repbase Update, a database of eukaryotic repetitive elements.

Authors:  J Jurka; V V Kapitonov; A Pavlicek; P Klonowski; O Kohany; J Walichiewicz
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

8.  Three-butterfly system provides a field test of müllerian mimicry.

Authors:  D D Kapan
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

9.  Phylogenetic shadowing of primate sequences to find functional regions of the human genome.

Authors:  Dario Boffelli; Jon McAuliffe; Dmitriy Ovcharenko; Keith D Lewis; Ivan Ovcharenko; Lior Pachter; Edward M Rubin
Journal:  Science       Date:  2003-02-28       Impact factor: 47.728

10.  Versatile and open software for comparing large genomes.

Authors:  Stefan Kurtz; Adam Phillippy; Arthur L Delcher; Michael Smoot; Martin Shumway; Corina Antonescu; Steven L Salzberg
Journal:  Genome Biol       Date:  2004-01-30       Impact factor: 13.583

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  65 in total

1.  A homeotic shift late in development drives mimetic color variation in a bumble bee.

Authors:  Li Tian; Sarthok Rasique Rahman; Briana D Ezray; Luca Franzini; James P Strange; Patrick Lhomme; Heather M Hines
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-01       Impact factor: 11.205

2.  Whole-chromosome hitchhiking driven by a male-killing endosymbiont.

Authors:  Simon H Martin; Kumar Saurabh Singh; Ian J Gordon; Kennedy Saitoti Omufwoko; Steve Collins; Ian A Warren; Hannah Munby; Oskar Brattström; Walther Traut; Dino J Martins; David A S Smith; Chris D Jiggins; Chris Bass; Richard H Ffrench-Constant
Journal:  PLoS Biol       Date:  2020-02-27       Impact factor: 8.029

3.  Single master regulatory gene coordinates the evolution and development of butterfly color and iridescence.

Authors:  Linlin Zhang; Anyi Mazo-Vargas; Robert D Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-18       Impact factor: 11.205

4.  Macroevolutionary shifts of WntA function potentiate butterfly wing-pattern diversity.

Authors:  Anyi Mazo-Vargas; Carolina Concha; Luca Livraghi; Darli Massardo; Richard W R Wallbank; Linlin Zhang; Joseph D Papador; Daniel Martinez-Najera; Chris D Jiggins; Marcus R Kronforst; Casper J Breuker; Robert D Reed; Nipam H Patel; W Owen McMillan; Arnaud Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-18       Impact factor: 11.205

5.  Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry.

Authors:  James J Lewis; Rachel C Geltman; Patrick C Pollak; Kathleen E Rondem; Steven M Van Belleghem; Melissa J Hubisz; Paul R Munn; Linlin Zhang; Caleb Benson; Anyi Mazo-Vargas; Charles G Danko; Brian A Counterman; Riccardo Papa; Robert D Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-11       Impact factor: 11.205

6.  Multiple Loci Control Eyespot Number Variation on the Hindwings of Bicyclus anynana Butterflies.

Authors:  Angel G Rivera-Colón; Erica L Westerman; Steven M Van Belleghem; Antónia Monteiro; Riccardo Papa
Journal:  Genetics       Date:  2020-02-04       Impact factor: 4.562

Review 7.  Moving Speciation Genetics Forward: Modern Techniques Build on Foundational Studies in Drosophila.

Authors:  Dean M Castillo; Daniel A Barbash
Journal:  Genetics       Date:  2017-11       Impact factor: 4.562

8.  A combined RAD-Seq and WGS approach reveals the genomic basis of yellow color variation in bumble bee Bombus terrestris.

Authors:  Sarthok Rasique Rahman; Jonathan Cnaani; Lisa N Kinch; Nick V Grishin; Heather M Hines
Journal:  Sci Rep       Date:  2021-04-12       Impact factor: 4.379

9.  patternize: An R package for quantifying colour pattern variation.

Authors:  Steven M Van Belleghem; Riccardo Papa; Humberto Ortiz-Zuazaga; Frederik Hendrickx; Chris D Jiggins; W Owen McMillan; Brian A Counterman
Journal:  Methods Ecol Evol       Date:  2017-07-11       Impact factor: 7.781

10.  Genomic architecture and introgression shape a butterfly radiation.

Authors:  Nathaniel B Edelman; Paul B Frandsen; Michael Miyagi; Bernardo Clavijo; John Davey; Rebecca B Dikow; Gonzalo García-Accinelli; Steven M Van Belleghem; Nick Patterson; Daniel E Neafsey; Richard Challis; Sujai Kumar; Gilson R P Moreira; Camilo Salazar; Mathieu Chouteau; Brian A Counterman; Riccardo Papa; Mark Blaxter; Robert D Reed; Kanchon K Dasmahapatra; Marcus Kronforst; Mathieu Joron; Chris D Jiggins; W Owen McMillan; Federica Di Palma; Andrew J Blumberg; John Wakeley; David Jaffe; James Mallet
Journal:  Science       Date:  2019-11-01       Impact factor: 47.728

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