Literature DB >> 31672890

Genomic architecture and introgression shape a butterfly radiation.

Nathaniel B Edelman1, Paul B Frandsen2,3, Michael Miyagi4, Bernardo Clavijo5, John Davey6,7, Rebecca B Dikow3, Gonzalo García-Accinelli5, Steven M Van Belleghem8, Nick Patterson9,10, Daniel E Neafsey10,11, Richard Challis12, Sujai Kumar13, Gilson R P Moreira14, Camilo Salazar15, Mathieu Chouteau16, Brian A Counterman17, Riccardo Papa8,18, Mark Blaxter12, Robert D Reed19, Kanchon K Dasmahapatra6, Marcus Kronforst20, Mathieu Joron21, Chris D Jiggins7, W Owen McMillan22, Federica Di Palma5, Andrew J Blumberg23, John Wakeley4, David Jaffe10,24, James Mallet1.   

Abstract

We used 20 de novo genome assemblies to probe the speciation history and architecture of gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete lineage sorting from introgression indicate that gene flow has obscured several ancient phylogenetic relationships in this group over large swathes of the genome. Introgressed loci are underrepresented in low-recombination and gene-rich regions, consistent with the purging of foreign alleles more tightly linked to incompatibility loci. Here, we identify a hitherto unknown inversion that traps a color pattern switch locus. We infer that this inversion was transferred between lineages by introgression and is convergent with a similar rearrangement in another part of the genus. These multiple de novo genome sequences enable improved understanding of the importance of introgression and selective processes in adaptive radiation.
Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2019        PMID: 31672890      PMCID: PMC7197882          DOI: 10.1126/science.aaw2090

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  74 in total

1.  Sex-linked hybrid sterility in a butterfly.

Authors:  C D Jiggins; M Linares; R E Naisbit; C Salazar; Z H Yang; J Mallet
Journal:  Evolution       Date:  2001-08       Impact factor: 3.694

2.  A metric on the space of reduced phylogenetic networks.

Authors:  Luay Nakhleh
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2010 Apr-Jun       Impact factor: 3.710

3.  A heterozygous moth genome provides insights into herbivory and detoxification.

Authors:  Minsheng You; Zhen Yue; Weiyi He; Xinhua Yang; Guang Yang; Miao Xie; Dongliang Zhan; Simon W Baxter; Liette Vasseur; Geoff M Gurr; Carl J Douglas; Jianlin Bai; Ping Wang; Kai Cui; Shiguo Huang; Xianchun Li; Qing Zhou; Zhangyan Wu; Qilin Chen; Chunhui Liu; Bo Wang; Xiaojing Li; Xiufeng Xu; Changxin Lu; Min Hu; John W Davey; Sandy M Smith; Mingshun Chen; Xiaofeng Xia; Weiqi Tang; Fushi Ke; Dandan Zheng; Yulan Hu; Fengqin Song; Yanchun You; Xiaoli Ma; Lu Peng; Yunkai Zheng; Yong Liang; Yaqiong Chen; Liying Yu; Younan Zhang; Yuanyuan Liu; Guoqing Li; Lin Fang; Jingxiang Li; Xin Zhou; Yadan Luo; Caiyun Gou; Junyi Wang; Jian Wang; Huanming Yang; Jun Wang
Journal:  Nat Genet       Date:  2013-01-13       Impact factor: 38.330

4.  Evolution of Darwin's finches and their beaks revealed by genome sequencing.

Authors:  Sangeet Lamichhaney; Jonas Berglund; Markus Sällman Almén; Khurram Maqbool; Manfred Grabherr; Alvaro Martinez-Barrio; Marta Promerová; Carl-Johan Rubin; Chao Wang; Neda Zamani; B Rosemary Grant; Peter R Grant; Matthew T Webster; Leif Andersson
Journal:  Nature       Date:  2015-02-11       Impact factor: 49.962

5.  Negligible nuclear introgression despite complete mitochondrial capture between two species of chipmunks.

Authors:  Jeffrey M Good; Dan Vanderpool; Sara Keeble; Ke Bi
Journal:  Evolution       Date:  2015-07-21       Impact factor: 3.694

6.  The genetics of monarch butterfly migration and warning colouration.

Authors:  Shuai Zhan; Wei Zhang; Kristjan Niitepõld; Jeremy Hsu; Juan Fernández Haeger; Myron P Zalucki; Sonia Altizer; Jacobus C de Roode; Steven M Reppert; Marcus R Kronforst
Journal:  Nature       Date:  2014-10-01       Impact factor: 49.962

7.  Ancient hybridization fuels rapid cichlid fish adaptive radiations.

Authors:  Joana I Meier; David A Marques; Salome Mwaiko; Catherine E Wagner; Laurent Excoffier; Ole Seehausen
Journal:  Nat Commun       Date:  2017-02-10       Impact factor: 14.919

8.  Recombination rate variation shapes barriers to introgression across butterfly genomes.

Authors:  Simon H Martin; John W Davey; Camilo Salazar; Chris D Jiggins
Journal:  PLoS Biol       Date:  2019-02-07       Impact factor: 8.029

9.  Evaluating the use of ABBA-BABA statistics to locate introgressed loci.

Authors:  Simon H Martin; John W Davey; Chris D Jiggins
Journal:  Mol Biol Evol       Date:  2014-09-22       Impact factor: 16.240

10.  No evidence for maintenance of a sympatric Heliconius species barrier by chromosomal inversions.

Authors:  John W Davey; Sarah L Barker; Pasi M Rastas; Ana Pinharanda; Simon H Martin; Richard Durbin; W Owen McMillan; Richard M Merrill; Chris D Jiggins
Journal:  Evol Lett       Date:  2017-06-14
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  91 in total

1.  Every butterfly in the United States and Canada now has a genome sequence.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2019-11       Impact factor: 49.962

2.  Adaptive Introgression across Semipermeable Species Boundaries between Local Helicoverpa zea and Invasive Helicoverpa armigera Moths.

Authors:  Wendy A Valencia-Montoya; Samia Elfekih; Henry L North; Joana I Meier; Ian A Warren; Wee Tek Tay; Karl H J Gordon; Alexandre Specht; Silvana V Paula-Moraes; Rahul Rane; Tom K Walsh; Chris D Jiggins
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

3.  A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids.

Authors:  Richard Allen; Hannah Ryan; Brian W Davis; Charlotte King; Laurent Frantz; Evan Irving-Pease; Ross Barnett; Anna Linderholm; Liisa Loog; James Haile; Ophélie Lebrasseur; Mark White; Andrew C Kitchener; William J Murphy; Greger Larson
Journal:  Proc Biol Sci       Date:  2020-06-03       Impact factor: 5.349

4.  Triad hybridization via a conduit species.

Authors:  Peter R Grant; B Rosemary Grant
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-25       Impact factor: 11.205

Review 5.  Interspecific hybridization as a driver of fungal evolution and adaptation.

Authors:  Jan Steensels; Brigida Gallone; Kevin J Verstrepen
Journal:  Nat Rev Microbiol       Date:  2021-03-25       Impact factor: 60.633

6.  A yeast living ancestor reveals the origin of genomic introgressions.

Authors:  Melania D'Angiolo; Matteo De Chiara; Jia-Xing Yue; Agurtzane Irizar; Simon Stenberg; Karl Persson; Agnès Llored; Benjamin Barré; Joseph Schacherer; Roberto Marangoni; Eric Gilson; Jonas Warringer; Gianni Liti
Journal:  Nature       Date:  2020-11-11       Impact factor: 49.962

7.  Morphological ghosts of introgression in Darwin's finch populations.

Authors:  Peter R Grant; B Rosemary Grant
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-03       Impact factor: 11.205

8.  The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies.

Authors:  James J Lewis; Francesco Cicconardi; Simon H Martin; Robert D Reed; Charles G Danko; Stephen H Montgomery
Journal:  Genome Biol Evol       Date:  2021-07-06       Impact factor: 3.416

9.  Chromosome Fusion Affects Genetic Diversity and Evolutionary Turnover of Functional Loci but Consistently Depends on Chromosome Size.

Authors:  Francesco Cicconardi; James J Lewis; Simon H Martin; Robert D Reed; Charles G Danko; Stephen H Montgomery
Journal:  Mol Biol Evol       Date:  2021-09-27       Impact factor: 16.240

10.  Chromosome-scale inference of hybrid speciation and admixture with convolutional neural networks.

Authors:  Paul D Blischak; Michael S Barker; Ryan N Gutenkunst
Journal:  Mol Ecol Resour       Date:  2021-03-08       Impact factor: 7.090

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