Literature DB >> 17662458

Theoretical study on electronic structures of FeOO, FeOOH, FeO(H2O), and FeO in hemes: as intermediate models of dioxygen reduction in cytochrome c oxidase.

Yasunori Yoshioka1, Hiroyuki Satoh, Masaki Mitani.   

Abstract

The electronic structures of heme-dioxygen complexes have been studied as intermediate models of dioxygen reduction mechanism catalyzed by the mixed valence (MV) and fully reduced (FR) cytochrome c oxidase (CcO). Dioxygen, protons and electrons were sequentially added to the heme along the proposed reaction path for the O(2) reduction mechanism. The electronic structures of [FeOO], [FeOO](-), [FeOOH](+), [FeOOH], [Fe=O, H(2)O](+), [Fe=O](+) and [Fe=O] were thoroughly investigated by using the unrestricted hybrid exchange-correlation functional B3LYP method. The additions of two protons and an electron to [FeOO] lead to the OO bond cleavage to produce a H(2)O molecule with the electron transfer from Fe(II) in heme to the OO moiety. It is shown that the intrinsic OO bond cleavage occurs by adding two protons and two electrons into the OO bond, indicating consistency with a H(2)O formation catalyzed by both MV and FR CcO. The study of the electronic structures of heme-dioxygen complexes gave the different proposals for the mechanisms of a H(2)O formation by both MV and FR CcO. For the mixed valence CcO, starting from the [FeOO] complex, the final products are single H(2)O molecule and compound I of the oxo heme. For the fully reduced CcO, the final products are single H(2)O molecule and compound II of the oxo heme which is a reduced state of the compound I.

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Year:  2007        PMID: 17662458     DOI: 10.1016/j.jinorgbio.2007.05.018

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  7 in total

1.  Molecular basis of intramolecular electron transfer in proteins during radical-mediated oxidations: computer simulation studies in model tyrosine-cysteine peptides in solution.

Authors:  Ariel A Petruk; Silvina Bartesaghi; Madia Trujillo; Darío A Estrin; Daniel Murgida; Balaraman Kalyanaraman; Marcelo A Marti; Rafael Radi
Journal:  Arch Biochem Biophys       Date:  2012-05-26       Impact factor: 4.013

2.  Phenol-Induced O-O Bond Cleavage in a Low-Spin Heme-Peroxo-Copper Complex: Implications for O2 Reduction in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Matthew T Kieber-Emmons; Suzanne M Adam; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-06-06       Impact factor: 15.419

3.  Heme-copper-dioxygen complexes: toward understanding ligand-environmental effects on the coordination geometry, electronic structure, and reactivity.

Authors:  Zakaria Halime; Matthew T Kieber-Emmons; Munzarin F Qayyum; Biplab Mondal; Thirumanavelan Gandhi; Simona C Puiu; Eduardo E Chufán; Amy A N Sarjeant; Keith O Hodgson; Britt Hedman; Edward I Solomon; Kenneth D Karlin
Journal:  Inorg Chem       Date:  2010-04-19       Impact factor: 5.165

4.  Spin states of Mn(III) meso-tetraphenylporphyrin chloride assessed by density functional methods.

Authors:  Higo de Lima Bezerra Cavalcanti; Gerd Bruno Rocha
Journal:  J Mol Model       Date:  2017-11-30       Impact factor: 1.810

5.  Geometric and Electronic Structure Contributions to O-O Cleavage and the Resultant Intermediate Generated in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Antonio C Roveda; Anex Jose; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-06-17       Impact factor: 15.419

6.  B3LYP study on reduction mechanisms from O2 to H2O at the catalytic sites of fully reduced and mixed-valence bovine cytochrome c oxidases.

Authors:  Yasunori Yoshioka; Masaki Mitani
Journal:  Bioinorg Chem Appl       Date:  2010-04-06       Impact factor: 7.778

7.  A broken-symmetry density functional study of structures, energies, and protonation states along the catalytic O-O bond cleavage pathway in ba3 cytochrome c oxidase from Thermus thermophilus.

Authors:  Wen-Ge Han Du; Andreas W Götz; Longhua Yang; Ross C Walker; Louis Noodleman
Journal:  Phys Chem Chem Phys       Date:  2016-04-20       Impact factor: 3.676

  7 in total

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