Literature DB >> 23661759

Robust circadian oscillations in growing cyanobacteria require transcriptional feedback.

Shu-Wen Teng1, Shankar Mukherji, Jeffrey R Moffitt, Sophie de Buyl, Erin K O'Shea.   

Abstract

The remarkably stable circadian oscillations of single cyanobacteria enable a population of growing cells to maintain synchrony for weeks. The cyanobacterial pacemaker is a posttranslational regulation (PTR) circuit that generates circadian oscillations in the phosphorylation state of the clock protein KaiC. Layered on top of the PTR is transcriptional-translational feedback regulation (TTR), common to all circadian systems, consisting of a negative feedback loop in which KaiC regulates its own production. We found that the PTR circuit is sufficient to generate oscillations in growing cyanobacteria. However, in the absence of TTR, individual oscillators were less stable and synchrony was not maintained in a population of cells. Experimentally constrained mathematical modeling reproduced sustained oscillations in the PTR circuit alone and demonstrated the importance of TTR for oscillator synchrony.

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Year:  2013        PMID: 23661759      PMCID: PMC3696982          DOI: 10.1126/science.1230996

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  23 in total

Review 1.  Molecular bases of circadian rhythms.

Authors:  S L Harmer; S Panda; S A Kay
Journal:  Annu Rev Cell Dev Biol       Date:  2001       Impact factor: 13.827

2.  Robustness of circadian rhythms with respect to molecular noise.

Authors:  Didier Gonze; José Halloy; Albert Goldbeter
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

Review 3.  Time zones: a comparative genetics of circadian clocks.

Authors:  M W Young; S A Kay
Journal:  Nat Rev Genet       Date:  2001-09       Impact factor: 53.242

4.  Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC.

Authors:  Yao Xu; Tetsuya Mori; Carl Hirschie Johnson
Journal:  EMBO J       Date:  2003-05-01       Impact factor: 11.598

5.  Circadian gating of the cell cycle revealed in single cyanobacterial cells.

Authors:  Qiong Yang; Bernardo F Pando; Guogang Dong; Susan S Golden; Alexander van Oudenaarden
Journal:  Science       Date:  2010-03-19       Impact factor: 47.728

6.  Circadian transcriptional regulation by the posttranslational oscillator without de novo clock gene expression in Synechococcus.

Authors:  Norimune Hosokawa; Tetsuhiro S Hatakeyama; Takashi Kojima; Yoshiyuki Kikuchi; Hiroshi Ito; Hideo Iwasaki
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

7.  The single-cell chemostat: an agarose-based, microfluidic device for high-throughput, single-cell studies of bacteria and bacterial communities.

Authors:  Jeffrey R Moffitt; Jeffrey B Lee; Philippe Cluzel
Journal:  Lab Chip       Date:  2012-03-07       Impact factor: 6.799

8.  Coupling of a core post-translational pacemaker to a slave transcription/translation feedback loop in a circadian system.

Authors:  Ximing Qin; Mark Byrne; Yao Xu; Tetsuya Mori; Carl Hirschie Johnson
Journal:  PLoS Biol       Date:  2010-06-15       Impact factor: 8.029

9.  Circadian clocks in human red blood cells.

Authors:  John S O'Neill; Akhilesh B Reddy
Journal:  Nature       Date:  2011-01-27       Impact factor: 49.962

10.  Circadian rhythms persist without transcription in a eukaryote.

Authors:  John S O'Neill; Gerben van Ooijen; Laura E Dixon; Carl Troein; Florence Corellou; François-Yves Bouget; Akhilesh B Reddy; Andrew J Millar
Journal:  Nature       Date:  2011-01-27       Impact factor: 49.962

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  55 in total

Review 1.  Circadian Rhythms in Cyanobacteria.

Authors:  Susan E Cohen; Susan S Golden
Journal:  Microbiol Mol Biol Rev       Date:  2015-12       Impact factor: 11.056

2.  Isolating live cells after high-throughput, long-term, time-lapse microscopy.

Authors:  Scott Luro; Laurent Potvin-Trottier; Burak Okumus; Johan Paulsson
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3.  Best practices for fluorescence microscopy of the cyanobacterial circadian clock.

Authors:  Susan E Cohen; Marcella L Erb; Joe Pogliano; Susan S Golden
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

4.  Circadian control of global gene expression by the cyanobacterial master regulator RpaA.

Authors:  Joseph S Markson; Joseph R Piechura; Anna M Puszynska; Erin K O'Shea
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

Review 5.  Timing the day: what makes bacterial clocks tick?

Authors:  Carl Hirschie Johnson; Chi Zhao; Yao Xu; Tetsuya Mori
Journal:  Nat Rev Microbiol       Date:  2017-02-20       Impact factor: 60.633

Review 6.  A day in the life of the meta-organism: diurnal rhythms of the intestinal microbiome and its host.

Authors:  Christoph A Thaiss; David Zeevi; Maayan Levy; Eran Segal; Eran Elinav
Journal:  Gut Microbes       Date:  2015

Review 7.  Live-cell imaging of cyanobacteria.

Authors:  Rayka Yokoo; Rachel D Hood; David F Savage
Journal:  Photosynth Res       Date:  2014-11-04       Impact factor: 3.573

Review 8.  Microbiome diurnal rhythmicity and its impact on host physiology and disease risk.

Authors:  Samuel Philip Nobs; Timur Tuganbaev; Eran Elinav
Journal:  EMBO Rep       Date:  2019-03-15       Impact factor: 8.807

Review 9.  Architecture and mechanism of the central gear in an ancient molecular timer.

Authors:  Martin Egli
Journal:  J R Soc Interface       Date:  2017-03       Impact factor: 4.118

10.  An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC.

Authors:  Rekha Pattanayek; Yao Xu; Aashish Lamichhane; Carl H Johnson; Martin Egli
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-04-30
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