| Literature DB >> 28510947 |
Grecebio Jonathan D Alejandro1,2,3, Carizza Marie M Magdaleno1, Joseph Alvin T Pacia1, Lyn D Paraguison3, Kim Karlo C Quiogue1, Annie Eliza D Wong1, Krysten Marie R Yayen1, Axel H Arriola4,5.
Abstract
BACKGROUND: Pyrostria sensu lato (s.l.) is regarded as one of the polyphyletic group within Vanguerieae formerly comprising of Pyrostria sensu stricto (s.s.), Pyrostria group A and Pyrostria group B delineated by the number of locules and geographical occurrence. Recent molecular phylogenetic studies within the genus have narrowed its circumscription that resulted in the merging of Pyrostria group A and Pyrostria s.s. Although some species of Pyrostria group B were already transferred to Pyrostria s.s. and Psydrax based on morphology, other representatives of the group remain unsettled.Entities:
Keywords: Bayesian analysis; ITS; Psydrax; Pyrostria; Vanguerieae; trnL-F
Year: 2014 PMID: 28510947 PMCID: PMC5432757 DOI: 10.1186/s40529-014-0065-3
Source DB: PubMed Journal: Bot Stud ISSN: 1817-406X Impact factor: 2.787
Nucleotide sequence database accession numbers of taxa used in this study
| Taxon | GenBank/EMBL Accession Number | |
|---|---|---|
| ITS |
| |
| AJ617749 | AJ620120 | |
| AJ617751 | AJ620123 | |
| AJ617753 | AJ620126 | |
| AJ617754 | AJ620127 | |
| AJ315107 | AJ620128 | |
| AJ617756 | AJ620130 | |
| AJ617758 | AJ620132 | |
| AJ617759 | AJ620133 | |
| AJ617750 | AJ620121 | |
| AJ315081 | AJ620122 | |
| AJ617752 | AJ620124 | |
|
| HG937666 | HG937663 |
| AJ315120 | AJ620125 | |
| AJ617775 | AJ620174 | |
| HG937664 | HG937661 | |
| AJ617755 | AJ620129 | |
| HG937665 | HG937660 | |
| HG937667 | HG937662 | |
| AJ315103 | AJ620136 | |
| AJ874981 | AJ874943 | |
| AJ315099 | AJ620139 | |
| AJ874982 | AJ874944 | |
| AJ315117 | AJ620143 | |
| AJ617761 | AJ620144 | |
| AJ617762 | AJ620145 | |
| AJ315105 | AJ620138 | |
| AJ617786 | AJ620157 | |
| AJ617769 | AJ620158 | |
| Aj617770 | Aj620159 | |
| Aj315110 | AJ620162 | |
| AJ617766 | AJ719194 | |
| AJ315114 | AJ620168 | |
| EU 584304 | FN386344 | |
| EU584285 | FN386347 | |
| AJ315115 | AJ620169 | |
| AJ617776 | AJ620176 | |
| EU584280 | FN386366 | |
| EU584283 | FN386350 | |
| AJ617777 | AJ620180 | |
| AJ875009 | AJ874975 | |
| AJ315092 | AJ620181 | |
| AJ224826 | AJ620117 | |
| AJ224823 | AJ620116 | |
Since vouchers of most taxa included in the study were published only the voucher information of the Philippine Canthium included in the study are provided as footnotes.
1Philippines, Province of Palawan, Arriola and Alejandro 12442 (USTH).
2Philippines, Province of Davao, Lemana and Alejandro BL10014 (USTH).
3Philippines, Province of Isabela, Lemana and Alejandro BA10017 (USTH).
4Philippines, Province of Quezon, Arriola and Alejandro S001 (USTH).
Matrix characteristics of separate and combined datasets
| ITS |
| Combined | |
|---|---|---|---|
| Number of taxa | 43 | 43 | 43 |
| Number of included characters | 691 | 1,002 | 1,693 |
| Number of informative characters | 190 | 43 | 233 |
| Consistency index | 0.56 | 0.93 | 0.64 |
| Retention index | 0.74 | 0.93 | 0.76 |
Figure 1Majority-rule consensus tree inferred from the Bayesian analysis of the combined ITS/ datasets of the 43 included taxa. The results are congruent with the results of parsimony analysis except for the nodes marked with asterisks. Numbers above branches indicates Bayesian posterior probabilities and those below branches are parsimony bootstrap values. Species under study are highlighted in grey.
Figure 2Images of the four plant species included in the study. A. Pyrostria obovatifolia fruiting branch; B. Pyrostria oligophlebia infructiscences; C. Pyrostria ramosii fruiting branch; D. Psydrax gynochthodes flowering branch.