Literature DB >> 28503291

How many more? Sample size determination in studies of morphological integration and evolvability.

Mark Grabowski1,2,3, Arthur Porto4,5.   

Abstract

1. The variational properties of living organisms are an important component of current evolutionary theory. As a consequence, researchers working on the field of multivariate evolution have increasingly used integration and evolvability statistics as a way of capturing the potentially complex patterns of trait association and their effects over evolutionary trajectories. Little attention has been paid, however, to the cascading effects that inaccurate estimates of trait covariance have on these widely used evolutionary statistics. 2. Here, we analyze the relationship between sampling effort and inaccuracy in evolvability and integration statistics calculated from 10-trait matrices with varying patterns of covariation and magnitudes of integration. We then extrapolate our initial approach to different numbers of traits and different magnitudes of integration and estimate general equations relating the inaccuracy of the statistics of interest to sampling effort. We validate our equations using a dataset of cranial traits, and use them to make sample size recommendations. 3. Our results suggest that highly inaccurate estimates of evolvability and integration statistics resulting from small sample sizes are likely common in the literature, given the sampling effort necessary to properly estimate them. We also show that patterns of covariation have no effect on the sampling properties of these statistics, but overall magnitudes of integration interact with sample size and lead to varying degrees of bias, imprecision, and inaccuracy. 4. Finally, we provide R functions that can be used to calculate recommended sample sizes or to simply estimate the level of inaccuracy that should be expected in these statistics, given a sampling design.

Entities:  

Keywords:  covariance matrices; multivariate evolution; quantitative genetics

Year:  2016        PMID: 28503291      PMCID: PMC5423670          DOI: 10.1111/2041-210X.12674

Source DB:  PubMed          Journal:  Methods Ecol Evol            Impact factor:   7.781


  27 in total

1.  Did natural selection or genetic drift produce the cranial diversification of neotropical monkeys?

Authors:  Gabriel Marroig; James M Cheverud
Journal:  Am Nat       Date:  2004-01-14       Impact factor: 3.926

2.  Morphological integration and the evolution of knuckle-walking.

Authors:  Scott A Williams
Journal:  J Hum Evol       Date:  2010-04-20       Impact factor: 3.895

3.  Size variation, growth strategies, and the evolution of modularity in the mammalian skull.

Authors:  Arthur Porto; Leila Teruko Shirai; Felipe Bandoni de Oliveira; Gabriel Marroig
Journal:  Evolution       Date:  2013-07-03       Impact factor: 3.694

4.  AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses.

Authors:  Surendra Kumar; Asmund Skjaeveland; Russell J S Orr; Pål Enger; Torgeir Ruden; Bjørn-Helge Mevik; Fabien Burki; Andreas Botnen; Kamran Shalchian-Tabrizi
Journal:  BMC Bioinformatics       Date:  2009-10-28       Impact factor: 3.169

Review 5.  Measurement and meaning in biology.

Authors:  David Houle; Christophe Pélabon; Günter P Wagner; Thomas F Hansen
Journal:  Q Rev Biol       Date:  2011-03       Impact factor: 4.875

6.  Meta-analysis of magnitudes, differences and variation in evolutionary parameters.

Authors:  M B Morrissey
Journal:  J Evol Biol       Date:  2016-10       Impact factor: 2.411

7.  Genetic and environmental contributions to variation in baboon cranial morphology.

Authors:  Charles C Roseman; Katherine E Willmore; Jeffrey Rogers; Charles Hildebolt; Brooke E Sadler; Joan T Richtsmeier; James M Cheverud
Journal:  Am J Phys Anthropol       Date:  2010-09       Impact factor: 2.868

8.  Phenotypic covariance structure in tamarins (genus Saguinus): a comparison of variation patterns using matrix correlation and common principal component analysis.

Authors:  R R Ackermann; J M Cheverud
Journal:  Am J Phys Anthropol       Date:  2000-04       Impact factor: 2.868

9.  Divergent patterns of integration and reduced constraint in the human hip and the origins of bipedalism.

Authors:  Mark W Grabowski; John D Polk; Charles C Roseman
Journal:  Evolution       Date:  2011-02-07       Impact factor: 3.694

10.  Assessing trait covariation and morphological integration on phylogenies using evolutionary covariance matrices.

Authors:  Dean C Adams; Ryan N Felice
Journal:  PLoS One       Date:  2014-04-11       Impact factor: 3.240

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  3 in total

1.  Measuring the magnitude of morphological integration: The effect of differences in morphometric representations and the inclusion of size.

Authors:  Fabio A Machado; Alex Hubbe; Diogo Melo; Arthur Porto; Gabriel Marroig
Journal:  Evolution       Date:  2019-10-28       Impact factor: 3.694

2.  On Information Rank Deficiency in Phenotypic Covariance Matrices.

Authors:  F Robin O'Keefe; Julie A Meachen; P David Polly
Journal:  Syst Biol       Date:  2022-06-16       Impact factor: 9.160

Review 3.  Using the resurrection approach to understand contemporary evolution in changing environments.

Authors:  Steven J Franks; Elena Hamann; Arthur E Weis
Journal:  Evol Appl       Date:  2017-09-03       Impact factor: 5.183

  3 in total

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