Literature DB >> 28502977

The evolutionary significance of polyploidy.

Yves Van de Peer1,2,3,4, Eshchar Mizrachi4,5, Kathleen Marchal1,3,5,6.   

Abstract

Polyploidy, or the duplication of entire genomes, has been observed in prokaryotic and eukaryotic organisms, and in somatic and germ cells. The consequences of polyploidization are complex and variable, and they differ greatly between systems (clonal or non-clonal) and species, but the process has often been considered to be an evolutionary 'dead end'. Here, we review the accumulating evidence that correlates polyploidization with environmental change or stress, and that has led to an increased recognition of its short-term adaptive potential. In addition, we discuss how, once polyploidy has been established, the unique retention profile of duplicated genes following whole-genome duplication might explain key longer-term evolutionary transitions and a general increase in biological complexity.

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Year:  2017        PMID: 28502977     DOI: 10.1038/nrg.2017.26

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  161 in total

1.  Aberrant Classopollis pollen reveals evidence for unreduced (2n) pollen in the conifer family Cheirolepidiaceae during the Triassic-Jurassic transition.

Authors:  Wolfram M Kürschner; Sietske J Batenburg; Luke Mander
Journal:  Proc Biol Sci       Date:  2013-08-07       Impact factor: 5.349

2.  Genomic plasticity and the diversity of polyploid plants.

Authors:  A R Leitch; I J Leitch
Journal:  Science       Date:  2008-04-25       Impact factor: 47.728

3.  Polyploids and hybrids in changing environments: winners or losers in the struggle for adaptation?

Authors:  B K Mable
Journal:  Heredity (Edinb)       Date:  2013-02       Impact factor: 3.821

4.  Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification.

Authors:  Dries Vekemans; Sebastian Proost; Kevin Vanneste; Heleen Coenen; Tom Viaene; Philip Ruelens; Steven Maere; Yves Van de Peer; Koen Geuten
Journal:  Mol Biol Evol       Date:  2012-07-20       Impact factor: 16.240

5.  A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.

Authors:  Massimo Iorizzo; Shelby Ellison; Douglas Senalik; Peng Zeng; Pimchanok Satapoomin; Jiaying Huang; Megan Bowman; Marina Iovene; Walter Sanseverino; Pablo Cavagnaro; Mehtap Yildiz; Alicja Macko-Podgórni; Emilia Moranska; Ewa Grzebelus; Dariusz Grzebelus; Hamid Ashrafi; Zhijun Zheng; Shifeng Cheng; David Spooner; Allen Van Deynze; Philipp Simon
Journal:  Nat Genet       Date:  2016-05-09       Impact factor: 38.330

6.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

7.  Cytokinesis failure generating tetraploids promotes tumorigenesis in p53-null cells.

Authors:  Takeshi Fujiwara; Madhavi Bandi; Masayuki Nitta; Elena V Ivanova; Roderick T Bronson; David Pellman
Journal:  Nature       Date:  2005-10-13       Impact factor: 49.962

Review 8.  Epigenetic and developmental regulation in plant polyploids.

Authors:  Qingxin Song; Z Jeffrey Chen
Journal:  Curr Opin Plant Biol       Date:  2015-03-10       Impact factor: 7.834

9.  Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary.

Authors:  Kevin Vanneste; Guy Baele; Steven Maere; Yves Van de Peer
Journal:  Genome Res       Date:  2014-05-16       Impact factor: 9.043

10.  Evolution of herbivore-induced early defense signaling was shaped by genome-wide duplications in Nicotiana.

Authors:  Wenwu Zhou; Thomas Brockmöller; Zhihao Ling; Ashton Omdahl; Ian T Baldwin; Shuqing Xu
Journal:  Elife       Date:  2016-11-04       Impact factor: 8.140

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  327 in total

1.  Model-Based Detection of Whole-Genome Duplications in a Phylogeny.

Authors:  Arthur Zwaenepoel; Yves Van de Peer
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

Review 2.  Evolutionary biology through the lens of budding yeast comparative genomics.

Authors:  Souhir Marsit; Jean-Baptiste Leducq; Éléonore Durand; Axelle Marchant; Marie Filteau; Christian R Landry
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

3.  A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit.

Authors:  Takashi Akagi; Isabelle M Henry; Haruka Ohtani; Takuya Morimoto; Kenji Beppu; Ikuo Kataoka; Ryutaro Tao
Journal:  Plant Cell       Date:  2018-04-06       Impact factor: 11.277

4.  The makings of higher-order polyploids. A commentary on: 'The story of promiscuous crucifers: origin and genome evolution of an invasive species, Cardamine occulta (Brassicaceae), and its relatives'.

Authors:  Michael Chester
Journal:  Ann Bot       Date:  2019-09-24       Impact factor: 4.357

5.  Whole-Genome Re-sequencing and Transcriptome Reveal Oogenesis-Related Genes in Autotetraploid Carassius auratus.

Authors:  Chongqing Wang; Huan Qin; Chun Zhao; Li Yang; Tingting Yu; Yuxin Zhang; Xiang Luo; Qinbo Qin; Shaojun Liu
Journal:  Mar Biotechnol (NY)       Date:  2021-03-06       Impact factor: 3.619

6.  Road map for domesticating multi-genome rice using gene editing.

Authors:  Diane R Wang
Journal:  Nature       Date:  2021-03-05       Impact factor: 49.962

7.  Changes in endogenous phytohormones regulated by microRNA-target mRNAs contribute to the development of Dwarf Autotetraploid Chinese Cabbage (Brassica rapa L. ssp. pekinensis).

Authors:  Yiheng Wang; Shengnan Huang; Zhiyong Liu; Xiaoyan Tang; Hui Feng
Journal:  Mol Genet Genomics       Date:  2018-08-16       Impact factor: 3.291

8.  Cryptic CH4 cycling in the sulfate-methane transition of marine sediments apparently mediated by ANME-1 archaea.

Authors:  F Beulig; H Røy; S E McGlynn; B B Jørgensen
Journal:  ISME J       Date:  2018-09-07       Impact factor: 10.302

9.  Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval.

Authors:  Liming Cai; Zhenxiang Xi; André M Amorim; M Sugumaran; Joshua S Rest; Liang Liu; Charles C Davis
Journal:  New Phytol       Date:  2018-07-21       Impact factor: 10.151

Review 10.  Polyploidy in liver development, homeostasis and disease.

Authors:  Romain Donne; Maëva Saroul-Aïnama; Pierre Cordier; Séverine Celton-Morizur; Chantal Desdouets
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2020-04-02       Impact factor: 46.802

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