Literature DB >> 28498564

Spatial Bayesian latent factor regression modeling of coordinate-based meta-analysis data.

Silvia Montagna1, Tor Wager2, Lisa Feldman Barrett3, Timothy D Johnson4, Thomas E Nichols5.   

Abstract

Now over 20 years old, functional MRI (fMRI) has a large and growing literature that is best synthesised with meta-analytic tools. As most authors do not share image data, only the peak activation coordinates (foci) reported in the article are available for Coordinate-Based Meta-Analysis (CBMA). Neuroimaging meta-analysis is used to (i) identify areas of consistent activation; and (ii) build a predictive model of task type or cognitive process for new studies (reverse inference). To simultaneously address these aims, we propose a Bayesian point process hierarchical model for CBMA. We model the foci from each study as a doubly stochastic Poisson process, where the study-specific log intensity function is characterized as a linear combination of a high-dimensional basis set. A sparse representation of the intensities is guaranteed through latent factor modeling of the basis coefficients. Within our framework, it is also possible to account for the effect of study-level covariates (meta-regression), significantly expanding the capabilities of the current neuroimaging meta-analysis methods available. We apply our methodology to synthetic data and neuroimaging meta-analysis datasets.
© 2017, The International Biometric Society.

Entities:  

Keywords:  Bayesian modeling; Factor analysis; Functional principal component analysis; Meta-analysis; Reverse inference; Spatial point pattern data

Mesh:

Year:  2017        PMID: 28498564      PMCID: PMC5682245          DOI: 10.1111/biom.12713

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  17 in total

1.  Meta-analysis of the functional neuroanatomy of single-word reading: method and validation.

Authors:  Peter E Turkeltaub; Guinevere F Eden; Karen M Jones; Thomas A Zeffiro
Journal:  Neuroimage       Date:  2002-07       Impact factor: 6.556

2.  A unified statistical approach for determining significant signals in images of cerebral activation.

Authors:  K J Worsley; S Marrett; P Neelin; A C Vandal; K J Friston; A C Evans
Journal:  Hum Brain Mapp       Date:  1996       Impact factor: 5.038

Review 3.  A brief introduction to functional MRI.

Authors:  James J Pekar
Journal:  IEEE Eng Med Biol Mag       Date:  2006 Mar-Apr

4.  Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses.

Authors:  Bertrand Thirion; Philippe Pinel; Sébastien Mériaux; Alexis Roche; Stanislas Dehaene; Jean-Baptiste Poline
Journal:  Neuroimage       Date:  2007-01-18       Impact factor: 6.556

5.  Meta-analysis of functional neuroimaging data: current and future directions.

Authors:  Tor D Wager; Martin Lindquist; Lauren Kaplan
Journal:  Soc Cogn Affect Neurosci       Date:  2007-06       Impact factor: 3.436

Review 6.  The secret lives of experiments: methods reporting in the fMRI literature.

Authors:  Joshua Carp
Journal:  Neuroimage       Date:  2012-07-10       Impact factor: 6.556

7.  Coordinate-based activation likelihood estimation meta-analysis of neuroimaging data: a random-effects approach based on empirical estimates of spatial uncertainty.

Authors:  Simon B Eickhoff; Angela R Laird; Christian Grefkes; Ling E Wang; Karl Zilles; Peter T Fox
Journal:  Hum Brain Mapp       Date:  2009-09       Impact factor: 5.038

8.  Bayesian latent factor regression for functional and longitudinal data.

Authors:  Silvia Montagna; Surya T Tokdar; Brian Neelon; David B Dunson
Journal:  Biometrics       Date:  2012-09-24       Impact factor: 2.571

9.  Large-scale automated synthesis of human functional neuroimaging data.

Authors:  Tal Yarkoni; Russell A Poldrack; Thomas E Nichols; David C Van Essen; Tor D Wager
Journal:  Nat Methods       Date:  2011-06-26       Impact factor: 28.547

10.  Coordinate based meta-analysis of functional neuroimaging data using activation likelihood estimation; full width half max and group comparisons.

Authors:  Christopher R Tench; Radu Tanasescu; Dorothee P Auer; William J Cottam; Cris S Constantinescu
Journal:  PLoS One       Date:  2014-09-16       Impact factor: 3.240

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  8 in total

1.  Bayesian log-Gaussian Cox process regression: with applications to meta-analysis of neuroimaging working memory studies.

Authors:  Pantelis Samartsidis; Claudia R Eickhoff; Simon B Eickhoff; Tor D Wager; Lisa Feldman Barrett; Shir Atzil; Timothy D Johnson; Thomas E Nichols
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2018-06-29       Impact factor: 1.864

2.  The coordinate-based meta-analysis of neuroimaging data.

Authors:  Pantelis Samartsidis; Silvia Montagna; Thomas E Nichols; Timothy D Johnson
Journal:  Stat Sci       Date:  2017-11-28       Impact factor: 2.901

3.  A Bayesian multivariate factor analysis model for evaluating an intervention by using observational time series data on multiple outcomes.

Authors:  Pantelis Samartsidis; Shaun R Seaman; Silvia Montagna; André Charlett; Matthew Hickman; Daniela De Angelis
Journal:  J R Stat Soc Ser A Stat Soc       Date:  2021-01-15       Impact factor: 2.483

4.  Estimating the prevalence of missing experiments in a neuroimaging meta-analysis.

Authors:  Pantelis Samartsidis; Silvia Montagna; Angela R Laird; Peter T Fox; Timothy D Johnson; Thomas E Nichols
Journal:  Res Synth Methods       Date:  2020-09-27       Impact factor: 5.273

5.  A Cortical Surface-Based Meta-Analysis of Human Reasoning.

Authors:  Minho Shin; Hyeon-Ae Jeon
Journal:  Cereb Cortex       Date:  2021-10-22       Impact factor: 5.357

6.  A spatial Bayesian latent factor model for image-on-image regression.

Authors:  Cui Guo; Jian Kang; Timothy D Johnson
Journal:  Biometrics       Date:  2021-01-13       Impact factor: 2.571

7.  A Bayesian Approach for the Use of Athlete Performance Data Within Anti-doping.

Authors:  Silvia Montagna; James Hopker
Journal:  Front Physiol       Date:  2018-07-19       Impact factor: 4.566

8.  Finding specificity in structural brain alterations through Bayesian reverse inference.

Authors:  Franco Cauda; Andrea Nani; Donato Liloia; Jordi Manuello; Enrico Premi; Sergio Duca; Peter T Fox; Tommaso Costa
Journal:  Hum Brain Mapp       Date:  2020-08-23       Impact factor: 5.399

  8 in total

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