Literature DB >> 28494967

Visualizing Calcium Flux in Freely Moving Nematode Embryos.

Evan L Ardiel1, Abhishek Kumar2, Joseph Marbach3, Ryan Christensen3, Rishi Gupta3, William Duncan3, Jonathan S Daniels4, Nico Stuurman5, Daniel Colón-Ramos6, Hari Shroff7.   

Abstract

The lack of physiological recordings from Caenorhabditis elegans embryos stands in stark contrast to the comprehensive anatomical and gene expression datasets already available. Using light-sheet fluorescence microscopy to address the challenges associated with functional imaging at this developmental stage, we recorded calcium dynamics in muscles and neurons and developed analysis strategies to relate activity and movement. In muscles, we found that the initiation of twitching was associated with a spreading calcium wave in a dorsal muscle bundle. Correlated activity in muscle bundles was linked with early twitching and eventual coordinated movement. To identify neuronal correlates of behavior, we monitored brainwide activity with subcellular resolution and identified a particularly active cell associated with muscle contractions. Finally, imaging neurons of a well-defined adult motor circuit, we found that reversals in the eggshell correlated with calcium transients in AVA interneurons. Published by Elsevier Inc.

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Year:  2017        PMID: 28494967      PMCID: PMC5425378          DOI: 10.1016/j.bpj.2017.02.035

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  43 in total

Review 1.  C. elegans locomotion: small circuits, complex functions.

Authors:  Mei Zhen; Aravinthan D T Samuel
Journal:  Curr Opin Neurobiol       Date:  2015-04-04       Impact factor: 6.627

2.  The neural circuit for touch sensitivity in Caenorhabditis elegans.

Authors:  M Chalfie; J E Sulston; J G White; E Southgate; J N Thomson; S Brenner
Journal:  J Neurosci       Date:  1985-04       Impact factor: 6.167

Review 3.  Mechanisms underlying spontaneous patterned activity in developing neural circuits.

Authors:  Aaron G Blankenship; Marla B Feller
Journal:  Nat Rev Neurosci       Date:  2009-12-02       Impact factor: 34.870

4.  DEX-1 and DYF-7 establish sensory dendrite length by anchoring dendritic tips during cell migration.

Authors:  Maxwell G Heiman; Shai Shaham
Journal:  Cell       Date:  2009-04-02       Impact factor: 41.582

5.  Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy.

Authors:  Yicong Wu; Peter Wawrzusin; Justin Senseney; Robert S Fischer; Ryan Christensen; Anthony Santella; Andrew G York; Peter W Winter; Clare M Waterman; Zhirong Bao; Daniel A Colón-Ramos; Matthew McAuliffe; Hari Shroff
Journal:  Nat Biotechnol       Date:  2013-10-13       Impact factor: 54.908

6.  Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.

Authors:  Saul Kato; Harris S Kaplan; Tina Schrödel; Susanne Skora; Theodore H Lindsay; Eviatar Yemini; Shawn Lockery; Manuel Zimmer
Journal:  Cell       Date:  2015-10-17       Impact factor: 41.582

7.  Compartmentalized calcium dynamics in a C. elegans interneuron encode head movement.

Authors:  Michael Hendricks; Heonick Ha; Nicolas Maffey; Yun Zhang
Journal:  Nature       Date:  2012-07-05       Impact factor: 49.962

8.  Genes critical for muscle development and function in Caenorhabditis elegans identified through lethal mutations.

Authors:  B D Williams; R H Waterston
Journal:  J Cell Biol       Date:  1994-02       Impact factor: 10.539

9.  Robust single-particle tracking in live-cell time-lapse sequences.

Authors:  Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Journal:  Nat Methods       Date:  2008-07-20       Impact factor: 28.547

10.  Dimensionality and dynamics in the behavior of C. elegans.

Authors:  Greg J Stephens; Bethany Johnson-Kerner; William Bialek; William S Ryu
Journal:  PLoS Comput Biol       Date:  2008-04-25       Impact factor: 4.475

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  13 in total

1.  Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution.

Authors:  Leighton H Duncan; Mark W Moyle; Lin Shao; Titas Sengupta; Richard Ikegami; Abhishek Kumar; Min Guo; Ryan Christensen; Anthony Santella; Zhirong Bao; Hari Shroff; William Mohler; Daniel A Colón-Ramos
Journal:  J Vis Exp       Date:  2019-06-06       Impact factor: 1.355

2.  How to Make a Worm Twitch.

Authors:  Philipp J Keller
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

Review 3.  Advances in Imaging Plant Cell Dynamics.

Authors:  George Komis; Dominik Novák; Miroslav Ovečka; Olga Šamajová; Jozef Šamaj
Journal:  Plant Physiol       Date:  2017-11-22       Impact factor: 8.340

4.  Stereotyped behavioral maturation and rhythmic quiescence in C. elegans embryos.

Authors:  Evan L Ardiel; Andrew Lauziere; Stephen Xu; Brandon J Harvey; Ryan Patrick Christensen; Stephen Nurrish; Joshua M Kaplan; Hari Shroff
Journal:  Elife       Date:  2022-08-05       Impact factor: 8.713

5.  Rapid image deconvolution and multiview fusion for optical microscopy.

Authors:  Min Guo; Yue Li; Yijun Su; Talley Lambert; Damian Dalle Nogare; Mark W Moyle; Leighton H Duncan; Richard Ikegami; Anthony Santella; Ivan Rey-Suarez; Daniel Green; Anastasia Beiriger; Jiji Chen; Harshad Vishwasrao; Sundar Ganesan; Victoria Prince; Jennifer C Waters; Christina M Annunziata; Markus Hafner; William A Mohler; Ajay B Chitnis; Arpita Upadhyaya; Ted B Usdin; Zhirong Bao; Daniel Colón-Ramos; Patrick La Riviere; Huafeng Liu; Yicong Wu; Hari Shroff
Journal:  Nat Biotechnol       Date:  2020-06-29       Impact factor: 68.164

6.  Reflective imaging improves spatiotemporal resolution and collection efficiency in light sheet microscopy.

Authors:  Yicong Wu; Abhishek Kumar; Corey Smith; Evan Ardiel; Panagiotis Chandris; Ryan Christensen; Ivan Rey-Suarez; Min Guo; Harshad D Vishwasrao; Jiji Chen; Jianyong Tang; Arpita Upadhyaya; Patrick J La Riviere; Hari Shroff
Journal:  Nat Commun       Date:  2017-11-13       Impact factor: 14.919

7.  Single-Cell Reconstruction of Emerging Population Activity in an Entire Developing Circuit.

Authors:  Yinan Wan; Ziqiang Wei; Loren L Looger; Minoru Koyama; Shaul Druckmann; Philipp J Keller
Journal:  Cell       Date:  2019-09-26       Impact factor: 41.582

8.  A polymer index-matched to water enables diverse applications in fluorescence microscopy.

Authors:  Xiaofei Han; Yijun Su; Hamilton White; Kate M O'Neill; Nicole Y Morgan; Ryan Christensen; Deepika Potarazu; Harshad D Vishwasrao; Stephen Xu; Yilun Sun; Shar-Yin Huang; Mark W Moyle; Qionghai Dai; Yves Pommier; Edward Giniger; Dirk R Albrecht; Roland Probst; Hari Shroff
Journal:  Lab Chip       Date:  2021-04-20       Impact factor: 6.799

9.  Rapid and gentle hydrogel encapsulation of living organisms enables long-term microscopy over multiple hours.

Authors:  Kyra Burnett; Eric Edsinger; Dirk R Albrecht
Journal:  Commun Biol       Date:  2018-06-21

10.  μSPIM Toolset: A software platform for selective plane illumination microscopy.

Authors:  Daniel Saska; Paul Pichler; Chen Qian; Christopher L Buckley; Leon Lagnado
Journal:  J Neurosci Methods       Date:  2020-10-02       Impact factor: 2.390

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