Literature DB >> 28493042

On the stochastic evolution of finite populations.

Fabio A C C Chalub1, Max O Souza2.   

Abstract

This work is a systematic study of discrete Markov chains that are used to describe the evolution of a two-types population. Motivated by results valid for the well-known Moran (M) and Wright-Fisher (WF) processes, we define a general class of Markov chains models which we term the Kimura class. It comprises the majority of the models used in population genetics, and we show that many well-known results valid for M and WF processes are still valid in this class. In all Kimura processes, a mutant gene will either fixate or become extinct, and we present a necessary and sufficient condition for such processes to have the probability of fixation strictly increasing in the initial frequency of mutants. This condition implies that there are WF processes with decreasing fixation probability-in contradistinction to M processes which always have strictly increasing fixation probability. As a by-product, we show that an increasing fixation probability defines uniquely an M or WF process which realises it, and that any fixation probability with no state having trivial fixation can be realised by at least some WF process. These results are extended to a subclass of processes that are suitable for describing time-inhomogeneous dynamics. We also discuss the traditional identification of frequency dependent fitnesses and pay-offs, extensively used in evolutionary game theory, the role of weak selection when the population is finite, and the relations between jumps in evolutionary processes and frequency dependent fitnesses.

Entities:  

Keywords:  Fixation probabilities; Perron–Frobenius property; Population genetics; Stochastic processes; Stochastically ordered processes; Time-inhomogeneous Markov chains

Mesh:

Year:  2017        PMID: 28493042     DOI: 10.1007/s00285-017-1135-4

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  47 in total

1.  Macroevolution is more than repeated rounds of microevolution.

Authors:  D H Erwin
Journal:  Evol Dev       Date:  2000 Mar-Apr       Impact factor: 1.930

2.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

3.  Fisher's microscope and Haldane's ellipse.

Authors:  D Waxman; J J Welch
Journal:  Am Nat       Date:  2005-08-05       Impact factor: 3.926

4.  Process Leading to Quasi-Fixation of Genes in Natural Populations Due to Random Fluctuation of Selection Intensities.

Authors:  M Kimura
Journal:  Genetics       Date:  1954-05       Impact factor: 4.562

5.  Stochasticity and evolutionary stability.

Authors:  Arne Traulsen; Jorge M Pacheco; Lorens A Imhof
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-08-04

6.  Languages evolve in punctuational bursts.

Authors:  Quentin D Atkinson; Andrew Meade; Chris Venditti; Simon J Greenhill; Mark Pagel
Journal:  Science       Date:  2008-02-01       Impact factor: 47.728

7.  Generalized population models and the nature of genetic drift.

Authors:  Ricky Der; Charles L Epstein; Joshua B Plotkin
Journal:  Theor Popul Biol       Date:  2011-06-28       Impact factor: 1.570

8.  Selfish and spiteful behaviour in an evolutionary model.

Authors:  W D Hamilton
Journal:  Nature       Date:  1970-12-19       Impact factor: 49.962

9.  The average number of generations until extinction of an individual mutant gene in a finite population.

Authors:  M Kimura; T Ota
Journal:  Genetics       Date:  1969-11       Impact factor: 4.562

Review 10.  Fitness and its role in evolutionary genetics.

Authors:  H Allen Orr
Journal:  Nat Rev Genet       Date:  2009-08       Impact factor: 53.242

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