Literature DB >> 28487920

Elucidating drug targets and mechanisms of action by genetic screens in mammalian cells.

Martin Kampmann1.   

Abstract

Phenotypic screening is a powerful approach to discover small molecules with desired effects on biological systems, which can then be developed into therapeutic drugs. The identification of the target and mechanism of action of compounds discovered in phenotypic screens remains a major challenge. This feature article describes the use of genetic tools to reveal drug targets and mechanisms in mammalian cells. Until recently, RNA interference was the method of choice for such studies. Here, we highlight very recent additions to the genetic toolkit in mammalian cells, including CRISPR, CRISPR interference, and CRISPR activation, and illustrate their usefulness for drug target identification.

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Year:  2017        PMID: 28487920      PMCID: PMC5507204          DOI: 10.1039/c7cc02349a

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  22 in total

1.  Phenotypic landscape of a bacterial cell.

Authors:  Robert J Nichols; Saunak Sen; Yoe Jin Choo; Pedro Beltrao; Matylda Zietek; Rachna Chaba; Sueyoung Lee; Krystyna M Kazmierczak; Karis J Lee; Angela Wong; Michael Shales; Susan Lovett; Malcolm E Winkler; Nevan J Krogan; Athanasios Typas; Carol A Gross
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

Review 2.  Novel trends in high-throughput screening.

Authors:  Lorenz M Mayr; Dejan Bojanic
Journal:  Curr Opin Pharmacol       Date:  2009-09-21       Impact factor: 5.547

3.  Suppression of B-cell development genes is key to glucocorticoid efficacy in treatment of acute lymphoblastic leukemia.

Authors:  Karina A Kruth; Mimi Fang; Dawne N Shelton; Ossama Abu-Halawa; Ryan Mahling; Hongxing Yang; Jonathan S Weissman; Mignon L Loh; Markus Müschen; Sarah K Tasian; Michael C Bassik; Martin Kampmann; Miles A Pufall
Journal:  Blood       Date:  2017-04-19       Impact factor: 22.113

4.  Genetic screens in human cells using the CRISPR-Cas9 system.

Authors:  Tim Wang; Jenny J Wei; David M Sabatini; Eric S Lander
Journal:  Science       Date:  2013-12-12       Impact factor: 47.728

5.  Stress responses. Mutations in a translation initiation factor identify the target of a memory-enhancing compound.

Authors:  Yusuke Sekine; Alisa Zyryanova; Ana Crespillo-Casado; Peter M Fischer; Heather P Harding; David Ron
Journal:  Science       Date:  2015-04-09       Impact factor: 47.728

6.  Genomic profiling of drug sensitivities via induced haploinsufficiency.

Authors:  G Giaever; D D Shoemaker; T W Jones; H Liang; E A Winzeler; A Astromoff; R W Davis
Journal:  Nat Genet       Date:  1999-03       Impact factor: 38.330

7.  Next-generation libraries for robust RNA interference-based genome-wide screens.

Authors:  Martin Kampmann; Max A Horlbeck; Yuwen Chen; Jordan C Tsai; Michael C Bassik; Luke A Gilbert; Jacqueline E Villalta; S Chul Kwon; Hyeshik Chang; V Narry Kim; Jonathan S Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-15       Impact factor: 11.205

8.  Next-generation NAMPT inhibitors identified by sequential high-throughput phenotypic chemical and functional genomic screens.

Authors:  Christina J Matheny; Michael C Wei; Michael C Bassik; Alicia J Donnelly; Martin Kampmann; Masayuki Iwasaki; Obdulio Piloto; David E Solow-Cordero; Donna M Bouley; Rachel Rau; Patrick Brown; Michael T McManus; Jonathan S Weissman; Michael L Cleary
Journal:  Chem Biol       Date:  2013-10-31

9.  Pharmacological brake-release of mRNA translation enhances cognitive memory.

Authors:  Carmela Sidrauski; Diego Acosta-Alvear; Arkady Khoutorsky; Punitha Vedantham; Brian R Hearn; Han Li; Karine Gamache; Ciara M Gallagher; Kenny K-H Ang; Chris Wilson; Voytek Okreglak; Avi Ashkenazi; Byron Hann; Karim Nader; Michelle R Arkin; Adam R Renslo; Nahum Sonenberg; Peter Walter
Journal:  Elife       Date:  2013-05-28       Impact factor: 8.140

10.  Unraveling the mechanism of cell death induced by chemical fibrils.

Authors:  Olivier Julien; Martin Kampmann; Michael C Bassik; Julie A Zorn; Vincent J Venditto; Kazutaka Shimbo; Nicholas J Agard; Kenichi Shimada; Arnold L Rheingold; Brent R Stockwell; Jonathan S Weissman; James A Wells
Journal:  Nat Chem Biol       Date:  2014-09-28       Impact factor: 15.040

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  12 in total

1.  Exploration of Benzothiazole Rhodacyanines as Allosteric Inhibitors of Protein-Protein Interactions with Heat Shock Protein 70 (Hsp70).

Authors:  Hao Shao; Xiaokai Li; Michael A Moses; Luke A Gilbert; Chakrapani Kalyanaraman; Zapporah T Young; Margarita Chernova; Sara N Journey; Jonathan S Weissman; Byron Hann; Matthew P Jacobson; Len Neckers; Jason E Gestwicki
Journal:  J Med Chem       Date:  2018-07-13       Impact factor: 7.446

Review 2.  Inhibitors and chemical probes for molecular chaperone networks.

Authors:  Jason E Gestwicki; Hao Shao
Journal:  J Biol Chem       Date:  2018-09-13       Impact factor: 5.157

Review 3.  CRISPRi and CRISPRa Screens in Mammalian Cells for Precision Biology and Medicine.

Authors:  Martin Kampmann
Journal:  ACS Chem Biol       Date:  2017-10-24       Impact factor: 5.100

4.  A campaign targeting a conserved Hsp70 binding site uncovers how subcellular localization is linked to distinct biological activities.

Authors:  Hao Shao; Shuhei Taguwa; Luke Gilbert; Arielle Shkedi; Sara Sannino; Christopher J Guerriero; Zachary J Gale-Day; Zapporah T Young; Jeffrey L Brodsky; Jonathan Weissman; Jason E Gestwicki; Judith Frydman
Journal:  Cell Chem Biol       Date:  2022-07-12       Impact factor: 9.039

5.  Nucleolus localization of SpyCas9 affects its stability and interferes with host protein translation in mammalian cells.

Authors:  Renke Tan; Wenhao Du; Yiyang Liu; Xiaoji Cong; Meirong Bai; Chenxiao Jiang; Zengxia Li; Minjia Tan; Dengke K Ma; Qiang Huang; Wei Jiang; Yongjun Dang
Journal:  Genes Dis       Date:  2020-09-25

6.  CRISPR-based genetic interaction maps inform therapeutic strategies in cancer.

Authors:  Poornima Ramkumar; Martin Kampmann
Journal:  Transl Cancer Res       Date:  2018-02       Impact factor: 1.241

Review 7.  CRISPR Approaches to Small Molecule Target Identification.

Authors:  Marco Jost; Jonathan S Weissman
Journal:  ACS Chem Biol       Date:  2018-01-25       Impact factor: 5.100

8.  Genomic and Targeted Approaches Unveil the Cell Membrane as a Major Target of the Antifungal Cytotoxin Amantelide A.

Authors:  Lobna A Elsadek; James H Matthews; Shinichi Nishimura; Takahiro Nakatani; Airi Ito; Tongjun Gu; Danmeng Luo; Lilibeth A Salvador-Reyes; Valerie J Paul; Hideaki Kakeya; Hendrik Luesch
Journal:  Chembiochem       Date:  2021-03-23       Impact factor: 3.164

9.  Cellular response to small molecules that selectively stall protein synthesis by the ribosome.

Authors:  Nadège Liaud; Max A Horlbeck; Luke A Gilbert; Ketrin Gjoni; Jonathan S Weissman; Jamie H D Cate
Journal:  PLoS Genet       Date:  2019-03-15       Impact factor: 5.917

10.  Combined CRISPRi/a-Based Chemical Genetic Screens Reveal that Rigosertib Is a Microtubule-Destabilizing Agent.

Authors:  Marco Jost; Yuwen Chen; Luke A Gilbert; Max A Horlbeck; Lenno Krenning; Grégory Menchon; Ankit Rai; Min Y Cho; Jacob J Stern; Andrea E Prota; Martin Kampmann; Anna Akhmanova; Michel O Steinmetz; Marvin E Tanenbaum; Jonathan S Weissman
Journal:  Mol Cell       Date:  2017-10-05       Impact factor: 17.970

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