Literature DB >> 29261286

CRISPR Approaches to Small Molecule Target Identification.

Marco Jost1,2, Jonathan S Weissman1.   

Abstract

A long-standing challenge in drug development is the identification of the mechanisms of action of small molecules with therapeutic potential. A number of methods have been developed to address this challenge, each with inherent strengths and limitations. We here provide a brief review of these methods with a focus on chemical-genetic methods that are based on systematically profiling the effects of genetic perturbations on drug sensitivity. In particular, application of these methods to mammalian systems has been facilitated by the recent advent of CRISPR-based approaches, which enable one to readily repress, induce, or delete a given gene and determine the resulting effects on drug sensitivity.

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Year:  2018        PMID: 29261286      PMCID: PMC5834945          DOI: 10.1021/acschembio.7b00965

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  100 in total

1.  Phenotypic landscape of a bacterial cell.

Authors:  Robert J Nichols; Saunak Sen; Yoe Jin Choo; Pedro Beltrao; Matylda Zietek; Rachna Chaba; Sueyoung Lee; Krystyna M Kazmierczak; Karis J Lee; Angela Wong; Michael Shales; Susan Lovett; Malcolm E Winkler; Nevan J Krogan; Athanasios Typas; Carol A Gross
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

2.  Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast.

Authors:  Ainslie B Parsons; Andres Lopez; Inmar E Givoni; David E Williams; Christopher A Gray; Justin Porter; Gordon Chua; Richelle Sopko; Renee L Brost; Cheuk-Hei Ho; Jiyi Wang; Troy Ketela; Charles Brenner; Julie A Brill; G Esteban Fernandez; Todd C Lorenz; Gregory S Payne; Satoru Ishihara; Yoshikazu Ohya; Brenda Andrews; Timothy R Hughes; Brendan J Frey; Todd R Graham; Raymond J Andersen; Charles Boone
Journal:  Cell       Date:  2006-08-11       Impact factor: 41.582

Review 3.  High-throughput functional genomics using CRISPR-Cas9.

Authors:  Ophir Shalem; Neville E Sanjana; Feng Zhang
Journal:  Nat Rev Genet       Date:  2015-04-09       Impact factor: 53.242

4.  Stress responses. Mutations in a translation initiation factor identify the target of a memory-enhancing compound.

Authors:  Yusuke Sekine; Alisa Zyryanova; Ana Crespillo-Casado; Peter M Fischer; Heather P Harding; David Ron
Journal:  Science       Date:  2015-04-09       Impact factor: 47.728

5.  Genomic profiling of drug sensitivities via induced haploinsufficiency.

Authors:  G Giaever; D D Shoemaker; T W Jones; H Liang; E A Winzeler; A Astromoff; R W Davis
Journal:  Nat Genet       Date:  1999-03       Impact factor: 38.330

6.  Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast.

Authors:  J Heitman; N R Movva; M N Hall
Journal:  Science       Date:  1991-08-23       Impact factor: 47.728

7.  A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response.

Authors:  Britt Adamson; Thomas M Norman; Marco Jost; Min Y Cho; James K Nuñez; Yuwen Chen; Jacqueline E Villalta; Luke A Gilbert; Max A Horlbeck; Marco Y Hein; Ryan A Pak; Andrew N Gray; Carol A Gross; Atray Dixit; Oren Parnas; Aviv Regev; Jonathan S Weissman
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

8.  Using transcriptome sequencing to identify mechanisms of drug action and resistance.

Authors:  Sarah A Wacker; Benjamin R Houghtaling; Olivier Elemento; Tarun M Kapoor
Journal:  Nat Chem Biol       Date:  2012-02-12       Impact factor: 15.040

9.  Pooled CRISPR screening with single-cell transcriptome readout.

Authors:  André F Rendeiro; Christian Schmidl; Paul Datlinger; Thomas Krausgruber; Peter Traxler; Johanna Klughammer; Linda C Schuster; Amelie Kuchler; Donat Alpar; Christoph Bock
Journal:  Nat Methods       Date:  2017-01-18       Impact factor: 28.547

10.  Correlating chemical sensitivity and basal gene expression reveals mechanism of action.

Authors:  Matthew G Rees; Brinton Seashore-Ludlow; Jaime H Cheah; Drew J Adams; Edmund V Price; Shubhroz Gill; Sarah Javaid; Matthew E Coletti; Victor L Jones; Nicole E Bodycombe; Christian K Soule; Benjamin Alexander; Ava Li; Philip Montgomery; Joanne D Kotz; C Suk-Yee Hon; Benito Munoz; Ted Liefeld; Vlado Dančík; Daniel A Haber; Clary B Clish; Joshua A Bittker; Michelle Palmer; Bridget K Wagner; Paul A Clemons; Alykhan F Shamji; Stuart L Schreiber
Journal:  Nat Chem Biol       Date:  2015-12-14       Impact factor: 15.040

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  22 in total

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Authors:  Hao Shao; Xiaokai Li; Michael A Moses; Luke A Gilbert; Chakrapani Kalyanaraman; Zapporah T Young; Margarita Chernova; Sara N Journey; Jonathan S Weissman; Byron Hann; Matthew P Jacobson; Len Neckers; Jason E Gestwicki
Journal:  J Med Chem       Date:  2018-07-13       Impact factor: 7.446

2.  A genome-wide analysis of targets of macrolide antibiotics in mammalian cells.

Authors:  Amita Gupta; Aye Ökesli-Armlovich; David Morgens; Michael C Bassik; Chaitan Khosla
Journal:  J Biol Chem       Date:  2020-01-08       Impact factor: 5.157

Review 3.  A new era in functional genomics screens.

Authors:  Laralynne Przybyla; Luke A Gilbert
Journal:  Nat Rev Genet       Date:  2021-09-20       Impact factor: 53.242

4.  A campaign targeting a conserved Hsp70 binding site uncovers how subcellular localization is linked to distinct biological activities.

Authors:  Hao Shao; Shuhei Taguwa; Luke Gilbert; Arielle Shkedi; Sara Sannino; Christopher J Guerriero; Zachary J Gale-Day; Zapporah T Young; Jeffrey L Brodsky; Jonathan Weissman; Jason E Gestwicki; Judith Frydman
Journal:  Cell Chem Biol       Date:  2022-07-12       Impact factor: 9.039

5.  Ras-mutant cancers are sensitive to small molecule inhibition of V-type ATPases in mice.

Authors:  Bhairavi Tolani; Anna Celli; Yanmin Yao; Yong Zi Tan; Richard Fetter; Christina R Liem; Adam J de Smith; Thamiya Vasanthakumar; Paola Bisignano; Adam D Cotton; Ian B Seiple; John L Rubinstein; Marco Jost; Jonathan S Weissman
Journal:  Nat Biotechnol       Date:  2022-07-25       Impact factor: 68.164

6.  MIC-Drop: A platform for large-scale in vivo CRISPR screens.

Authors:  Saba Parvez; Chelsea Herdman; Manu Beerens; Korak Chakraborti; Zachary P Harmer; Jing-Ruey J Yeh; Calum A MacRae; H Joseph Yost; Randall T Peterson
Journal:  Science       Date:  2021-08-19       Impact factor: 63.714

7.  Nucleolus localization of SpyCas9 affects its stability and interferes with host protein translation in mammalian cells.

Authors:  Renke Tan; Wenhao Du; Yiyang Liu; Xiaoji Cong; Meirong Bai; Chenxiao Jiang; Zengxia Li; Minjia Tan; Dengke K Ma; Qiang Huang; Wei Jiang; Yongjun Dang
Journal:  Genes Dis       Date:  2020-09-25

Review 8.  Natural products as modulators of eukaryotic protein secretion.

Authors:  Hendrik Luesch; Ville O Paavilainen
Journal:  Nat Prod Rep       Date:  2020-02-18       Impact factor: 13.423

Review 9.  Nuisance compounds in cellular assays.

Authors:  Jayme L Dahlin; Douglas S Auld; Ina Rothenaigner; Steve Haney; Jonathan Z Sexton; J Willem M Nissink; Jarrod Walsh; Jonathan A Lee; John M Strelow; Francis S Willard; Lori Ferrins; Jonathan B Baell; Michael A Walters; Bruce K Hua; Kamyar Hadian; Bridget K Wagner
Journal:  Cell Chem Biol       Date:  2021-02-15       Impact factor: 8.116

10.  Mapping the Genetic Landscape of Human Cells.

Authors:  Max A Horlbeck; Albert Xu; Min Wang; Neal K Bennett; Chong Y Park; Derek Bogdanoff; Britt Adamson; Eric D Chow; Martin Kampmann; Tim R Peterson; Ken Nakamura; Michael A Fischbach; Jonathan S Weissman; Luke A Gilbert
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

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