Literature DB >> 28485684

Circular RNA - New member of noncoding RNA with novel functions.

Kuei-Yang Hsiao1, H Sunny Sun2, Shaw-Jenq Tsai1.   

Abstract

A growing body of evidence indicates that circular RNAs are not simply a side product of splicing but a new class of noncoding RNAs in higher eukaryotes. The progression for the studies of circular RNAs is accelerated by combination of several advanced technologies such as next generation sequencing, gene silencing (small interfering RNAs) and editing (CRISPR/Cas9). More and more studies showed that dysregulated expression of circular RNAs plays critical roles during the development of several human diseases. Herein, we review the current advance of circular RNAs for their biosynthesis, molecular functions, and implications in human diseases. Impact statement The accumulating evidence indicate that circular RNA (circRNA) is a novel class of noncoding RNA with diverse molecular functions. Our review summarizes the current hypotheses for the models of circRNA biosynthesis including the direct interaction between upstream and downstream introns and lariat-driven circularization. In addition, molecular functions such as a decoy of microRNA (miRNA) termed miRNA sponge, transcriptional regulator, and protein-like modulator are also discussed. Finally, we reviewed the potential roles of circRNAs in neural system, cardiovascular system as well as cancers. These should provide insightful information for studying the regulation and functions of circRNA in other model of human diseases.

Entities:  

Keywords:  Circular RNA; cancer; cardiovascular disease; miRNA sponge; molecular adaptor; neuronal disease

Mesh:

Substances:

Year:  2017        PMID: 28485684      PMCID: PMC5478007          DOI: 10.1177/1535370217708978

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  40 in total

1.  Inverse splicing of a discontinuous pre-mRNA intron generates a circular exon in a HeLa cell nuclear extract.

Authors:  S Braun; H Domdey; K Wiebauer
Journal:  Nucleic Acids Res       Date:  1996-11-01       Impact factor: 16.971

2.  Scrambled exons.

Authors:  J M Nigro; K R Cho; E R Fearon; S E Kern; J M Ruppert; J D Oliner; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

3.  A pathway of cytochrome b mRNA processing in yeast mitochondria: specific splicing steps and an intron-derived circular DNA.

Authors:  A Halbreich; P Pajot; M Foucher; C Grandchamp; P Slonimski
Journal:  Cell       Date:  1980-02       Impact factor: 41.582

4.  RBM20, a gene for hereditary cardiomyopathy, regulates titin splicing.

Authors:  Wei Guo; Sebastian Schafer; Marion L Greaser; Michael H Radke; Martin Liss; Thirupugal Govindarajan; Henrike Maatz; Herbert Schulz; Shijun Li; Amanda M Parrish; Vita Dauksaite; Padmanabhan Vakeel; Sabine Klaassen; Brenda Gerull; Ludwig Thierfelder; Vera Regitz-Zagrosek; Timothy A Hacker; Kurt W Saupe; G William Dec; Patrick T Ellinor; Calum A MacRae; Bastian Spallek; Robert Fischer; Andreas Perrot; Cemil Özcelik; Kathrin Saar; Norbert Hubner; Michael Gotthardt
Journal:  Nat Med       Date:  2012-05       Impact factor: 53.440

5.  Complementary sequence-mediated exon circularization.

Authors:  Xiao-Ou Zhang; Hai-Bin Wang; Yang Zhang; Xuhua Lu; Ling-Ling Chen; Li Yang
Journal:  Cell       Date:  2014-09-18       Impact factor: 41.582

6.  Circular intronic long noncoding RNAs.

Authors:  Yang Zhang; Xiao-Ou Zhang; Tian Chen; Jian-Feng Xiang; Qing-Fei Yin; Yu-Hang Xing; Shanshan Zhu; Li Yang; Ling-Ling Chen
Journal:  Mol Cell       Date:  2013-09-12       Impact factor: 17.970

7.  CIRI: an efficient and unbiased algorithm for de novo circular RNA identification.

Authors:  Yuan Gao; Jinfeng Wang; Fangqing Zhao
Journal:  Genome Biol       Date:  2015-01-13       Impact factor: 13.583

8.  Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs.

Authors:  Qiupeng Zheng; Chunyang Bao; Weijie Guo; Shuyi Li; Jie Chen; Bing Chen; Yanting Luo; Dongbin Lyu; Yan Li; Guohai Shi; Linhui Liang; Jianren Gu; Xianghuo He; Shenglin Huang
Journal:  Nat Commun       Date:  2016-04-06       Impact factor: 14.919

9.  Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans.

Authors:  Lesca M Holdt; Anika Stahringer; Kristina Sass; Garwin Pichler; Nils A Kulak; Wolfgang Wilfert; Alexander Kohlmaier; Andreas Herbst; Bernd H Northoff; Alexandros Nicolaou; Gabor Gäbel; Frank Beutner; Markus Scholz; Joachim Thiery; Kiran Musunuru; Knut Krohn; Matthias Mann; Daniel Teupser
Journal:  Nat Commun       Date:  2016-08-19       Impact factor: 14.919

10.  DNMT1-interacting RNAs block gene-specific DNA methylation.

Authors:  Annalisa Di Ruscio; Alexander K Ebralidze; Touati Benoukraf; Giovanni Amabile; Loyal A Goff; Jolyon Terragni; Maria Eugenia Figueroa; Lorena Lobo De Figueiredo Pontes; Meritxell Alberich-Jorda; Pu Zhang; Mengchu Wu; Francesco D'Alò; Ari Melnick; Giuseppe Leone; Konstantin K Ebralidze; Sriharsa Pradhan; John L Rinn; Daniel G Tenen
Journal:  Nature       Date:  2013-10-09       Impact factor: 49.962

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  136 in total

1.  Microarray expression profile and analysis of circular RNA regulatory network in malignant pleural effusion.

Authors:  Yakun Wen; Yong Wang; Zhenchuan Xing; Zongjian Liu; Ziliang Hou
Journal:  Cell Cycle       Date:  2018-12-27       Impact factor: 4.534

Review 2.  Emerging roles of non-coding RNAs in the pathogenesis, diagnosis and prognosis of osteosarcoma.

Authors:  Chongchong Wang; Juehua Jing; Li Cheng
Journal:  Invest New Drugs       Date:  2018-08-06       Impact factor: 3.850

Review 3.  Emerging roles for noncoding RNAs in female sex steroids and reproductive disease.

Authors:  Runju Zhang; Victoria Wesevich; Zhaojuan Chen; Dan Zhang; Amanda N Kallen
Journal:  Mol Cell Endocrinol       Date:  2020-07-12       Impact factor: 4.102

4.  Differential expression and bioinformatic analysis of circRNA in nonalcoholic steatohepatitis cirrhosis.

Authors:  Yuexin Fan; Yang Zheng; Jiahui Wang; Tiejian Zhao; Tianjian Liang
Journal:  Int J Clin Exp Pathol       Date:  2020-11-01

5.  The integrative regulatory network of circRNA and microRNA in keloid scarring.

Authors:  Jingpei Shi; Shuluan Yao; Pan Chen; Yuan Yang; Mengjiao Qian; Yi Han; Nan Wang; Yu Zhao; Yongjing He; Lechun Lyu; Di Lu
Journal:  Mol Biol Rep       Date:  2019-10-14       Impact factor: 2.316

6.  CircRNA hsa_circ_100395 regulates miR-1228/TCF21 pathway to inhibit lung cancer progression.

Authors:  Daishi Chen; Wei Ma; Zhaoyang Ke; Fei Xie
Journal:  Cell Cycle       Date:  2018-09-13       Impact factor: 4.534

Review 7.  Non-coding RNAs: are they the protagonist or antagonist in the regulation of leukemia?

Authors:  Mrinnanda Bhattacharya; Ravi Kumar Gutti
Journal:  Am J Transl Res       Date:  2022-03-15       Impact factor: 4.060

8.  Circular RNA circ_0000950 promotes neuron apoptosis, suppresses neurite outgrowth and elevates inflammatory cytokines levels via directly sponging miR-103 in Alzheimer's disease.

Authors:  Hui Yang; Huan Wang; Hong Shang; Xiufen Chen; Shiqi Yang; Yang Qu; Jing Ding; Xuling Li
Journal:  Cell Cycle       Date:  2019-08-02       Impact factor: 4.534

9.  Microarray profiles reveal that circular RNA hsa_circ_0007385 functions as an oncogene in non-small cell lung cancer tumorigenesis.

Authors:  Ming-Ming Jiang; Zhi-Tao Mai; Shan-Zhi Wan; Yu-Min Chi; Xin Zhang; Bao-Hua Sun; Qing-Guo Di
Journal:  J Cancer Res Clin Oncol       Date:  2018-01-25       Impact factor: 4.553

10.  Epstein-Barr virus-derived circular RNA LMP2A induces stemness in EBV-associated gastric cancer.

Authors:  Li-Ping Gong; Jian-Ning Chen; Min Dong; Zhen-Dong Xiao; Zhi-Ying Feng; Yu-Hang Pan; Yu Zhang; Yu Du; Jing-Yue Zhang; Yuan-Hua Bi; Jun-Ting Huang; Jing Liang; Chun-Kui Shao
Journal:  EMBO Rep       Date:  2020-08-12       Impact factor: 8.807

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