| Literature DB >> 28482813 |
Ting-Song Hu1,2, Hai-Lin Zhang1,3, Yun Feng3, Jian-Hua Fan4, Tian Tang1, Yong-Hua Liu5, Liu Zhang1, Xiao-Xiong Yin5, Gang Chen1, Hua-Chang Li6, Jin Zu4, Hong-Bin Li4, Yuan-Yuan Li4, Jing Yu1, Fu-Qiang Zhang7, Quan-Shui Fan8.
Abstract
BACKGROUND: Yunnan Province is located in southwestern China and neighbors the Southeast Asian countries, all of which are dengue-endemic areas. In 2000-2013, sporadic imported cases of dengue fever (DF) were reported almost annually in Yunnan Province. During 2013-2015, we confirmed that a large-scale indigenous DF outbreak emerged in cities of Yunnan Province near the China-Myanmar-Laos border.Entities:
Keywords: Dengue fever; Dengue virus; E gene; Homology; Molecular epidemiology; Phylogenetic analysis; Public health
Mesh:
Substances:
Year: 2017 PMID: 28482813 PMCID: PMC5422898 DOI: 10.1186/s12879-017-2401-1
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Fig. 1Regional distribution of dengue fever cases in Yunnan Province, China, 2013–2015. The green region is Yunnan Province, which comprises 16 prefectures and is located in Southwest China. The cities with large-scale dengue outbreaks are highlighted using red triangles (including indigenous and imported cases), and sporadic imported cases of dengue fever evaluated in this paper are highlighted using blue pentagrams. The maps were generated and modified with Photoshop CS 8.0.1
Regional distribution of dengue fever cases in Yunnan Province, China, 2013 to 2015
| Prefecture | 2013 | 2014 | 2015 | Total | |||
|---|---|---|---|---|---|---|---|
| Indigenous | Imported | Indigenous | Imported | Indigenous | Imported | ||
| Kunming | 0 | 20 | 0 | 16 | 0 | 16 | 52 |
| Qujing | 0 | 0 | 0 | 1 | 0 | 5 | 6 |
| Yuxi | 0 | 1 | 0 | 0 | 0 | 2 | 3 |
| Baoshan | 0 | 2 | 0 | 3 | 0 | 6 | 11 |
| Zhaotong | 0 | 0 | 0 | 2 | 0 | 2 | 4 |
| Lijiang | 0 | 1 | 0 | 0 | 0 | 1 | 2 |
| Puer | 0 | 1 | 0 | 0 | 0 | 6 | 7 |
| Lincang | 0 | 0 | 0 | 1 | 96 | 104 | 201 |
| Chuxiong | 0 | 0 | 0 | 1 | 0 | 0 | 1 |
| Honghe | 0 | 0 | 0 | 0 | 0 | 3 | 3 |
| Wenshan | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Xishangbanna | 1287 | 44 | 0 | 0 | 1089 | 42 | 2462 |
| Dali | 0 | 1 | 0 | 2 | 2 | 0 | 5 |
| Dehong | 145 | 93 | 139 | 158 | 309 | 418 | 1262 |
| Nujiang | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Diqing | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Total | 4019 | ||||||
Fig. 2Monthly distribution of dengue fever cases in Yunnan Province, China, 2013–2015. a Monthly distribution of all indigenous and imported dengue fever cases in Ruili City, 2013–2015. b–d. Monthly distribution of indigenous and imported dengue fever cases in Ruili City in 2013 b, 2014 c, and 2015 d. e Monthly distribution of indigenous dengue fever cases in Jinghong City, 2013 and 2015. *There were more indigenous cases than imported cases in Jinghong, thus analysis of monthly distribution only included indigenous dengue fever cases. f Monthly distribution of indigenous dengue fever cases in Gengma County, 2015
Fig. 3Age distribution of dengue fever cases in Yunnan Province of China, 2013–2015. Age distribution a and case constituent ratio b of age composition of dengue fever cases in Ruili City, 2013–2015. Age distribution c and case constituent ratio d of age composition of dengue fever cases in Jinghong City, 2013–2015
Serotype Identification and Amplification of the CprM Gene of dengue fever cases in Yunnan Province, China, 2013 to 2015
| Prefecture | 2013 | 2014 | 2015 | Total | |||
|---|---|---|---|---|---|---|---|
| Indigenous | Imported | Indigenous | Imported | Indigenous | Imported | ||
| Kunming |
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| I (2)b | I (2) | ||||||
| Lincang |
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| I (5) | I (8) | I (13) | |||||
| Dehong |
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| I (2) | I (1) | I (19) | I (26) | I (16) | I (10) | I (74) | |
| II (5) | II (1) | II (3) | II (1) | II (17) | II (11) | II (38) | |
| IV (2) | IV (5) | IV (7) | |||||
| Xishangbanna |
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| III (11) | III (1) | II (17) | II (2) | II (19) | |||
aThe denominator was the number of the positive acute serum of DENV NS1 antigen to Amplification of the CprM, and the numerator was the number of positive acute serum of Amplificating the DENV CprM in the test samples. b: I, II, III and IV is the 4 distinct serotypes: DENV-1, DENV-2, DENV-3 and DENV-4, respectively; the number in the bracket is the number of DENV serotype
Fig. 4Phylogenetic analysis of isolated DENV-1 E gene sequences with homologous strains reported in Yunnan Province. The phylogenetic tree was generated in MEGA version 6 (www.megasoftware.net) using the neighbor-joining method with 1000 bootstrap replicates. Viruses isolated from indigenous and imported cases evaluated in this paper are highlighted using red branches (isolates from imported cases are labeled with blue triangles). The isolates RL16–RL58, DGRL6–DGRL283, and 15DGR5–15DGR410 were isolated from Ruili City in 2013, 2014, and 2015, respectively. The isolates GM1502–GM1510 and LC1502 were isolated from Gengma County and Linxiang County of Lincang Prefecture in 2015. The isolates YNH22 andYNH12 were isolated from Kunming Prefecture in 2013
Fig. 5Phylogenetic analysis of isolated DENV-2 E gene sequences with homologous strains reported in Yunnan Province. The phylogenetic tree was generated in MEGA version 6 using the neighbor-joining method with 1000 bootstrap replicates. Viruses isolated from indigenous and imported cases evaluated in this paper are highlighted using red branches (isolates from imported cases are labeled with blue triangles). The isolates RL16–RL54 and 15DGR8–15DGR641 were isolated from Ruili City of Dehong Prefecture in 2013 and 2015, respectively. The isolates JH1502–JH15–207 were isolated from Jinghong City of Xishuangbanna Prefecture in 2015
Fig. 6Phylogenetic analysis of isolated DENV E gene sequences with homologous strains reported in Yunnan Province. The phylogenetic tree was generated in MEGA version 6 using the neighbor-joining method with 1000 bootstrap replicates. Viruses isolated from indigenous and imported cases evaluated in this paper are highlighted using red branches (isolates from imported cases are labeled with blue triangles). The isolates JH88–JH931 and MN1302–MN1308 were isolated from Jinghong City and Mengla County of Xishuangbanna Prefecture in 2013, respectively; the isolates 15DGR9–15DGR394 were isolated from Ruili City of Dehong Prefecture in 2015. a DENV-3, b DENV-4