Literature DB >> 28475859

Inferring Human Demographic Histories of Non-African Populations from Patterns of Allele Sharing.

Jeffrey D Wall1.   

Abstract

Recent human-genetics studies have come to different conclusions regarding how and when modern humans spread out of Africa and into the rest of the world. I present here a simple parsimony-based analysis that suggests that East Asians and Melanesians are sister groups, and I discuss what implications this has for recent claims made about the demographic histories of non-African populations.
Copyright © 2017 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2017        PMID： 28475859      PMCID： PMC5420348          DOI： 10.1016/j.ajhg.2017.04.002

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN： 0002-9297            Impact factor:   11.025


  29 in total

1.  Estimation of levels of gene flow from DNA sequence data.

Authors:  R R Hudson; M Slatkin; W P Maddison
Journal:  Genetics       Date:  1992-10       Impact factor: 4.562

2.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

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Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

4.  A draft sequence of the Neandertal genome.

Authors:  Johannes Krause; Adrian W Briggs; Tomislav Maricic; Udo Stenzel; Martin Kircher; Nick Patterson; Richard E Green; Heng Li; Weiwei Zhai; Markus Hsi-Yang Fritz; Nancy F Hansen; Eric Y Durand; Anna-Sapfo Malaspinas; Jeffrey D Jensen; Tomas Marques-Bonet; Can Alkan; Kay Prüfer; Matthias Meyer; Hernán A Burbano; Jeffrey M Good; Rigo Schultz; Ayinuer Aximu-Petri; Anne Butthof; Barbara Höber; Barbara Höffner; Madlen Siegemund; Antje Weihmann; Chad Nusbaum; Eric S Lander; Carsten Russ; Nathaniel Novod; Jason Affourtit; Michael Egholm; Christine Verna; Pavao Rudan; Dejana Brajkovic; Željko Kucan; Ivan Gušic; Vladimir B Doronichev; Liubov V Golovanova; Carles Lalueza-Fox; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Ralf W Schmitz; Philip L F Johnson; Evan E Eichler; Daniel Falush; Ewan Birney; James C Mullikin; Montgomery Slatkin; Rasmus Nielsen; Janet Kelso; Michael Lachmann; David Reich; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

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Authors:  David Reich; Nick Patterson; Martin Kircher; Frederick Delfin; Madhusudan R Nandineni; Irina Pugach; Albert Min-Shan Ko; Ying-Chin Ko; Timothy A Jinam; Maude E Phipps; Naruya Saitou; Andreas Wollstein; Manfred Kayser; Svante Pääbo; Mark Stoneking
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Authors:  Anna-Sapfo Malaspinas; Michael C Westaway; Craig Muller; Vitor C Sousa; Oscar Lao; Isabel Alves; Anders Bergström; Georgios Athanasiadis; Jade Y Cheng; Jacob E Crawford; Tim H Heupink; Enrico Macholdt; Stephan Peischl; Simon Rasmussen; Stephan Schiffels; Sankar Subramanian; Joanne L Wright; Anders Albrechtsen; Chiara Barbieri; Isabelle Dupanloup; Anders Eriksson; Ashot Margaryan; Ida Moltke; Irina Pugach; Thorfinn S Korneliussen; Ivan P Levkivskyi; J Víctor Moreno-Mayar; Shengyu Ni; Fernando Racimo; Martin Sikora; Yali Xue; Farhang A Aghakhanian; Nicolas Brucato; Søren Brunak; Paula F Campos; Warren Clark; Sturla Ellingvåg; Gudjugudju Fourmile; Pascale Gerbault; Darren Injie; George Koki; Matthew Leavesley; Betty Logan; Aubrey Lynch; Elizabeth A Matisoo-Smith; Peter J McAllister; Alexander J Mentzer; Mait Metspalu; Andrea B Migliano; Les Murgha; Maude E Phipps; William Pomat; Doc Reynolds; Francois-Xavier Ricaut; Peter Siba; Mark G Thomas; Thomas Wales; Colleen Ma'run Wall; Stephen J Oppenheimer; Chris Tyler-Smith; Richard Durbin; Joe Dortch; Andrea Manica; Mikkel H Schierup; Robert A Foley; Marta Mirazón Lahr; Claire Bowern; Jeffrey D Wall; Thomas Mailund; Mark Stoneking; Rasmus Nielsen; Manjinder S Sandhu; Laurent Excoffier; David M Lambert; Eske Willerslev
Journal:  Nature       Date:  2016-09-21       Impact factor: 49.962

7.  An early modern human from Romania with a recent Neanderthal ancestor.

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Journal:  Nature       Date:  2015-06-22       Impact factor: 49.962

8.  The complete genome sequence of a Neanderthal from the Altai Mountains.

Authors:  Kay Prüfer; Fernando Racimo; Nick Patterson; Flora Jay; Sriram Sankararaman; Susanna Sawyer; Anja Heinze; Gabriel Renaud; Peter H Sudmant; Cesare de Filippo; Heng Li; Swapan Mallick; Michael Dannemann; Qiaomei Fu; Martin Kircher; Martin Kuhlwilm; Michael Lachmann; Matthias Meyer; Matthias Ongyerth; Michael Siebauer; Christoph Theunert; Arti Tandon; Priya Moorjani; Joseph Pickrell; James C Mullikin; Samuel H Vohr; Richard E Green; Ines Hellmann; Philip L F Johnson; Hélène Blanche; Howard Cann; Jacob O Kitzman; Jay Shendure; Evan E Eichler; Ed S Lein; Trygve E Bakken; Liubov V Golovanova; Vladimir B Doronichev; Michael V Shunkov; Anatoli P Derevianko; Bence Viola; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

9.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

10.  Genomic analyses inform on migration events during the peopling of Eurasia.

Authors:  Luca Pagani; Daniel John Lawson; Evelyn Jagoda; Alexander Mörseburg; Anders Eriksson; Richard Villems; Eske Willerslev; Toomas Kivisild; Mait Metspalu; Mario Mitt; Florian Clemente; Georgi Hudjashov; Michael DeGiorgio; Lauri Saag; Jeffrey D Wall; Alexia Cardona; Reedik Mägi; Melissa A Wilson Sayres; Sarah Kaewert; Charlotte Inchley; Christiana L Scheib; Mari Järve; Monika Karmin; Guy S Jacobs; Tiago Antao; Florin Mircea Iliescu; Alena Kushniarevich; Qasim Ayub; Chris Tyler-Smith; Yali Xue; Bayazit Yunusbayev; Kristiina Tambets; Chandana Basu Mallick; Lehti Saag; Elvira Pocheshkhova; George Andriadze; Craig Muller; Michael C Westaway; David M Lambert; Grigor Zoraqi; Shahlo Turdikulova; Dilbar Dalimova; Zhaxylyk Sabitov; Gazi Nurun Nahar Sultana; Joseph Lachance; Sarah Tishkoff; Kuvat Momynaliev; Jainagul Isakova; Larisa D Damba; Marina Gubina; Pagbajabyn Nymadawa; Irina Evseeva; Lubov Atramentova; Olga Utevska; François-Xavier Ricaut; Nicolas Brucato; Herawati Sudoyo; Thierry Letellier; Murray P Cox; Nikolay A Barashkov; Vedrana Skaro; Lejla Mulahasanovic; Dragan Primorac; Hovhannes Sahakyan; Maru Mormina; Christina A Eichstaedt; Daria V Lichman; Syafiq Abdullah; Gyaneshwer Chaubey; Joseph T S Wee; Evelin Mihailov; Alexandra Karunas; Sergei Litvinov; Rita Khusainova; Natalya Ekomasova; Vita Akhmetova; Irina Khidiyatova; Damir Marjanović; Levon Yepiskoposyan; Doron M Behar; Elena Balanovska; Andres Metspalu; Miroslava Derenko; Boris Malyarchuk; Mikhail Voevoda; Sardana A Fedorova; Ludmila P Osipova; Marta Mirazón Lahr; Pascale Gerbault; Matthew Leavesley; Andrea Bamberg Migliano; Michael Petraglia; Oleg Balanovsky; Elza K Khusnutdinova; Ene Metspalu; Mark G Thomas; Andrea Manica; Rasmus Nielsen
Journal:  Nature       Date:  2016-09-21       Impact factor: 49.962
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  7 in total

Review 1.  Origins of modern human ancestry.

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Journal:  Nature       Date:  2021-02-10       Impact factor: 49.962

2.  Inference of complex population histories using whole-genome sequences from multiple populations.

Authors:  Matthias Steinrücken; Jack Kamm; Jeffrey P Spence; Yun S Song
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-06       Impact factor: 11.205

3.  Revisiting the out of Africa event with a deep-learning approach.

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4.  Genetics and Material Culture Support Repeated Expansions into Paleolithic Eurasia from a Population Hub Out of Africa.

Authors:  Leonardo Vallini; Giulia Marciani; Serena Aneli; Eugenio Bortolini; Stefano Benazzi; Telmo Pievani; Luca Pagani
Journal:  Genome Biol Evol       Date:  2022-04-10       Impact factor: 4.065

5.  Approximate Bayesian computation with deep learning supports a third archaic introgression in Asia and Oceania.

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6.  Evolutionary history of disease-susceptibility loci identified in longitudinal exome-wide association studies.

Authors:  Yoshiki Yasukochi; Jun Sakuma; Ichiro Takeuchi; Kimihiko Kato; Mitsutoshi Oguri; Tetsuo Fujimaki; Hideki Horibe; Yoshiji Yamada
Journal:  Mol Genet Genomic Med       Date:  2019-08-11       Impact factor: 2.183

7.  The GenomeAsia 100K Project enables genetic discoveries across Asia.

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  7 in total

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