Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics.

Literature DB >> 28475350

Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics.

Kathryn M Pendleton¹, John R Erb-Downward¹, Yuwei Bao¹, William R Branton¹, Nicole R Falkowski¹, Duane W Newton¹, Gary B Huffnagle^1,2, Robert P Dickson^1,3.

Abstract

Mesh：

Substances：
RNA, Ribosomal

Year: 2017 PMID： 28475350 PMCID： PMC5754443 DOI： 10.1164/rccm.201703-0537LE

Source DB: PubMed Journal: Am J Respir Crit Care Med ISSN： 1073-449X Impact factor: 21.405

× No keyword cloud information.

9 in total

Review 1. The Microbiome and the Respiratory Tract.

Authors: Robert P Dickson; John R Erb-Downward; Fernando J Martinez; Gary B Huffnagle
Journal: Annu Rev Physiol Date: 2015-11-02 Impact factor: 19.318

2. Analysis of culture-dependent versus culture-independent techniques for identification of bacteria in clinically obtained bronchoalveolar lavage fluid.

Authors: Robert P Dickson; John R Erb-Downward; Hallie C Prescott; Fernando J Martinez; Jeffrey L Curtis; Vibha N Lama; Gary B Huffnagle
Journal: J Clin Microbiol Date: 2014-07-30 Impact factor: 5.948

3. Deaths: Final Data for 2014.

Authors: Kenneth D Kochanek; Sherry L Murphy; Jiaquan Xu; Betzaida Tejada-Vera
Journal: Natl Vital Stat Rep Date: 2016-06

4. Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing.

Authors: K Schmidt; S Mwaigwisya; L C Crossman; M Doumith; D Munroe; C Pires; A M Khan; N Woodford; N J Saunders; J Wain; J O'Grady; D M Livermore
Journal: J Antimicrob Chemother Date: 2016-09-25 Impact factor: 5.790

5. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia.

Authors: Ali M Zaki; Sander van Boheemen; Theo M Bestebroer; Albert D M E Osterhaus; Ron A M Fouchier
Journal: N Engl J Med Date: 2012-10-17 Impact factor: 91.245

6. Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome.

Authors: Robert P Dickson; Benjamin H Singer; Michael W Newstead; Nicole R Falkowski; John R Erb-Downward; Theodore J Standiford; Gary B Huffnagle
Journal: Nat Microbiol Date: 2016-07-18 Impact factor: 17.745

7. Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples.

Authors: Antonina A Votintseva; Phelim Bradley; Louise Pankhurst; Carlos Del Ojo Elias; Matthew Loose; Kayzad Nilgiriwala; Anirvan Chatterjee; E Grace Smith; Nicolas Sanderson; Timothy M Walker; Marcus R Morgan; David H Wyllie; A Sarah Walker; Tim E A Peto; Derrick W Crook; Zamin Iqbal
Journal: J Clin Microbiol Date: 2017-03-08 Impact factor: 5.948

8. Mobile real-time surveillance of Zika virus in Brazil.

Authors: Nuno Rodrigues Faria; Ester C Sabino; Marcio R T Nunes; Luiz Carlos Junior Alcantara; Nicholas J Loman; Oliver G Pybus
Journal: Genome Med Date: 2016-09-29 Impact factor: 11.117

9. Real-time, portable genome sequencing for Ebola surveillance.

Authors: Joshua Quick; Nicholas J Loman; Sophie Duraffour; Jared T Simpson; Ettore Severi; Lauren Cowley; Joseph Akoi Bore; Raymond Koundouno; Gytis Dudas; Amy Mikhail; Nobila Ouédraogo; Babak Afrough; Amadou Bah; Jonathan Hj Baum; Beate Becker-Ziaja; Jan-Peter Boettcher; Mar Cabeza-Cabrerizo; Alvaro Camino-Sanchez; Lisa L Carter; Juiliane Doerrbecker; Theresa Enkirch; Isabel Graciela García Dorival; Nicole Hetzelt; Julia Hinzmann; Tobias Holm; Liana Eleni Kafetzopoulou; Michel Koropogui; Abigail Kosgey; Eeva Kuisma; Christopher H Logue; Antonio Mazzarelli; Sarah Meisel; Marc Mertens; Janine Michel; Didier Ngabo; Katja Nitzsche; Elisa Pallash; Livia Victoria Patrono; Jasmine Portmann; Johanna Gabriella Repits; Natasha Yasmin Rickett; Andrea Sachse; Katrin Singethan; Inês Vitoriano; Rahel L Yemanaberhan; Elsa G Zekeng; Racine Trina; Alexander Bello; Amadou Alpha Sall; Ousmane Faye; Oumar Faye; N'Faly Magassouba; Cecelia V Williams; Victoria Amburgey; Linda Winona; Emily Davis; Jon Gerlach; Franck Washington; Vanessa Monteil; Marine Jourdain; Marion Bererd; Alimou Camara; Hermann Somlare; Abdoulaye Camara; Marianne Gerard; Guillaume Bado; Bernard Baillet; Déborah Delaune; Koumpingnin Yacouba Nebie; Abdoulaye Diarra; Yacouba Savane; Raymond Bernard Pallawo; Giovanna Jaramillo Gutierrez; Natacha Milhano; Isabelle Roger; Christopher J Williams; Facinet Yattara; Kuiama Lewandowski; Jamie Taylor; Philip Rachwal; Daniel Turner; Georgios Pollakis; Julian A Hiscox; David A Matthews; Matthew K O'Shea; Andrew McD Johnston; Duncan Wilson; Emma Hutley; Erasmus Smit; Antonino Di Caro; Roman Woelfel; Kilian Stoecker; Erna Fleischmann; Martin Gabriel; Simon A Weller; Lamine Koivogui; Boubacar Diallo; Sakoba Keita; Andrew Rambaut; Pierre Formenty; Stephan Gunther; Miles W Carroll
Journal: Nature Date: 2016-02-03 Impact factor: 69.504

9 in total

51 in total

Review 1. The Lung Microbiome and Its Role in Pneumonia.

Authors: Benjamin G Wu; Leopoldo N Segal
Journal: Clin Chest Med Date: 2018-12 Impact factor: 2.878

2. Rethinking pneumonia: A paradigm shift with practical utility.

Authors: Rishi Chanderraj; Robert P Dickson
Journal: Proc Natl Acad Sci U S A Date: 2018-12-07 Impact factor: 11.205

3. BAL Fluid Metaproteome in Acute Respiratory Failure.

Authors: Pratik D Jagtap; Kevin J Viken; James Johnson; Thomas McGowan; Kathryn M Pendleton; Timothy J Griffin; Ryan C Hunter; Joel D Rudney; Maneesh Bhargava
Journal: Am J Respir Cell Mol Biol Date: 2018-11 Impact factor: 6.914

4. Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.

Authors: Qun Yan; Yu Mi Wi; Matthew J Thoendel; Yash S Raval; Kerryl E Greenwood-Quaintance; Matthew P Abdel; Patricio R Jeraldo; Nicholas Chia; Robin Patel
Journal: J Clin Microbiol Date: 2019-01-30 Impact factor: 5.948

5. Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing.

Authors: Morgan I Ivy; Matthew J Thoendel; Patricio R Jeraldo; Kerryl E Greenwood-Quaintance; Arlen D Hanssen; Matthew P Abdel; Nicholas Chia; Janet Z Yao; Aaron J Tande; Jayawant N Mandrekar; Robin Patel
Journal: J Clin Microbiol Date: 2018-08-27 Impact factor: 5.948