Literature DB >> 28471430

DNA-RNA hybrids: the risks of DNA breakage during transcription.

Andrés Aguilera1, Belén Gómez-González1.   

Abstract

Although R loops can occur at different genomic locations, the factors that determine their formation and frequency remain unclear. Emerging evidence indicates that DNA breaks stimulate DNA-RNA hybrid formation. Here, we discuss the possibility that formation of hybrids may be an inevitable risk of DNA breaks that occur within actively transcribed regions. While such hybrids must be removed to permit repair, their potential role as repair intermediates remains to be established.

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Year:  2017        PMID: 28471430     DOI: 10.1038/nsmb.3395

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  62 in total

1.  Cotranscriptionally formed DNA:RNA hybrids mediate transcription elongation impairment and transcription-associated recombination.

Authors:  Pablo Huertas; Andrés Aguilera
Journal:  Mol Cell       Date:  2003-09       Impact factor: 17.970

2.  R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants.

Authors:  Peter C Stirling; Yujia A Chan; Sean W Minaker; Maria J Aristizabal; Irene Barrett; Payal Sipahimalani; Michael S Kobor; Philip Hieter
Journal:  Genes Dev       Date:  2012-01-15       Impact factor: 11.361

Review 3.  Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology.

Authors:  Marc Drolet
Journal:  Mol Microbiol       Date:  2006-02       Impact factor: 3.501

4.  Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex.

Authors:  Ralf E Wellinger; Félix Prado; Andrés Aguilera
Journal:  Mol Cell Biol       Date:  2006-04       Impact factor: 4.272

5.  Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region.

Authors:  Feng-Ting Huang; Kefei Yu; Barbara B Balter; Erik Selsing; Zeliha Oruc; Ahmed Amine Khamlichi; Chih-Lin Hsieh; Michael R Lieber
Journal:  Mol Cell Biol       Date:  2007-06-11       Impact factor: 4.272

6.  DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.

Authors:  Lei Li; Devon R Germain; Ho-Yin Poon; Matthew R Hildebrandt; Elizabeth A Monckton; Darin McDonald; Michael J Hendzel; Roseline Godbout
Journal:  Mol Cell Biol       Date:  2016-10-28       Impact factor: 4.272

7.  Site-specific DICER and DROSHA RNA products control the DNA-damage response.

Authors:  Sofia Francia; Flavia Michelini; Alka Saxena; Dave Tang; Michiel de Hoon; Viviana Anelli; Marina Mione; Piero Carninci; Fabrizio d'Adda di Fagagna
Journal:  Nature       Date:  2012-08-09       Impact factor: 49.962

8.  The homologous recombination machinery modulates the formation of RNA-DNA hybrids and associated chromosome instability.

Authors:  Lamia Wahba; Steven K Gore; Douglas Koshland
Journal:  Elife       Date:  2013-06-11       Impact factor: 8.140

9.  RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.

Authors:  Julie Nadel; Rodoniki Athanasiadou; Christophe Lemetre; N Ari Wijetunga; Pilib Ó Broin; Hanae Sato; Zhengdong Zhang; Jeffrey Jeddeloh; Cristina Montagna; Aaron Golden; Cathal Seoighe; John M Greally
Journal:  Epigenetics Chromatin       Date:  2015-11-16       Impact factor: 4.954

Review 10.  Out of balance: R-loops in human disease.

Authors:  Matthias Groh; Natalia Gromak
Journal:  PLoS Genet       Date:  2014-09-18       Impact factor: 5.917

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  61 in total

1.  The DNA damage response acts as a safeguard against harmful DNA-RNA hybrids of different origins.

Authors:  Sonia Barroso; Emilia Herrera-Moyano; Sergio Muñoz; María García-Rubio; Belén Gómez-González; Andrés Aguilera
Journal:  EMBO Rep       Date:  2019-07-24       Impact factor: 8.807

2.  DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.

Authors:  Alessio De Magis; Stefano G Manzo; Marco Russo; Jessica Marinello; Rita Morigi; Olivier Sordet; Giovanni Capranico
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-27       Impact factor: 11.205

Review 3.  R-Loops as Cellular Regulators and Genomic Threats.

Authors:  Madzia P Crossley; Michael Bocek; Karlene A Cimprich
Journal:  Mol Cell       Date:  2019-02-07       Impact factor: 17.970

Review 4.  Maintenance of genome stability: the unifying role of interconnections between the DNA damage response and RNA-processing pathways.

Authors:  B Mikolaskova; M Jurcik; I Cipakova; M Kretova; M Chovanec; L Cipak
Journal:  Curr Genet       Date:  2018-03-01       Impact factor: 3.886

5.  Chromatin modifiers Mdm2 and RNF2 prevent RNA:DNA hybrids that impair DNA replication.

Authors:  Ina Klusmann; Kai Wohlberedt; Anna Magerhans; Federico Teloni; Jan O Korbel; Matthias Altmeyer; Matthias Dobbelstein
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-09       Impact factor: 11.205

6.  Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks.

Authors:  Franziska Bonath; Judit Domingo-Prim; Marcel Tarbier; Marc R Friedländer; Neus Visa
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

7.  Spontaneous DNA-RNA hybrids: differential impacts throughout the cell cycle.

Authors:  Belén Gómez-González; Sonia Barroso; Emilia Herrera-Moyano; Andrés Aguilera
Journal:  Cell Cycle       Date:  2020-02-16       Impact factor: 4.534

8.  Regional Gene Repression by DNA Double-Strand Breaks in G1 Phase Cells.

Authors:  Caitlin E Purman; Patrick L Collins; Sofia I Porter; Ankita Saini; Harshath Gupta; Barry P Sleckman; Eugene M Oltz
Journal:  Mol Cell Biol       Date:  2019-11-25       Impact factor: 4.272

9.  Genome-wide Map of R-Loop-Induced Damage Reveals How a Subset of R-Loops Contributes to Genomic Instability.

Authors:  Lorenzo Costantino; Douglas Koshland
Journal:  Mol Cell       Date:  2018-08-02       Impact factor: 17.970

Review 10.  Origin matters: spontaneous DNA-RNA hybrids do not form in trans as a source of genome instability.

Authors:  Belén Gómez-González; Andrés Aguilera
Journal:  Curr Genet       Date:  2020-10-23       Impact factor: 3.886

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