Literature DB >> 28471429

Capturing heterogeneity: single-cell structures of the 3D genome.

Elzo de Wit1.   

Abstract

Mesh：

Year:  2017        PMID： 28471429     DOI： 10.1038/nsmb.3404

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  19 in total

Review 1.  Single-cell sequencing-based technologies will revolutionize whole-organism science.

Authors:  Ehud Shapiro; Tamir Biezuner; Sten Linnarsson
Journal:  Nat Rev Genet       Date:  2013-07-30       Impact factor: 53.242

Review 2.  Sequencing technologies - the next generation.

Authors:  Michael L Metzker
Journal:  Nat Rev Genet       Date:  2009-12-08       Impact factor: 53.242

3.  Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation.

Authors:  Daan Peric-Hupkes; Wouter Meuleman; Ludo Pagie; Sophia W M Bruggeman; Irina Solovei; Wim Brugman; Stefan Gräf; Paul Flicek; Ron M Kerkhoven; Maarten van Lohuizen; Marcel Reinders; Lodewyk Wessels; Bas van Steensel
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

4.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

5.  Formation of Chromosomal Domains by Loop Extrusion.

Authors:  Geoffrey Fudenberg; Maxim Imakaev; Carolyn Lu; Anton Goloborodko; Nezar Abdennur; Leonid A Mirny
Journal:  Cell Rep       Date:  2016-05-19       Impact factor: 9.423

6.  Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Authors:  Jesse R Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S Liu; Bing Ren
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

7.  Massively multiplex single-cell Hi-C.

Authors:  Vijay Ramani; Xinxian Deng; Ruolan Qiu; Kevin L Gunderson; Frank J Steemers; Christine M Disteche; William S Noble; Zhijun Duan; Jay Shendure
Journal:  Nat Methods       Date:  2017-01-30       Impact factor: 28.547

8.  3D structures of individual mammalian genomes studied by single-cell Hi-C.

Authors:  Tim J Stevens; David Lando; Srinjan Basu; Liam P Atkinson; Yang Cao; Steven F Lee; Martin Leeb; Kai J Wohlfahrt; Wayne Boucher; Aoife O'Shaughnessy-Kirwan; Julie Cramard; Andre J Faure; Meryem Ralser; Enrique Blanco; Lluis Morey; Miriam Sansó; Matthieu G S Palayret; Ben Lehner; Luciano Di Croce; Anton Wutz; Brian Hendrich; Dave Klenerman; Ernest D Laue
Journal:  Nature       Date:  2017-03-13       Impact factor: 49.962

9.  Genome-wide maps of nuclear lamina interactions in single human cells.

Authors:  Jop Kind; Ludo Pagie; Sandra S de Vries; Leila Nahidiazar; Siddharth S Dey; Magda Bienko; Ye Zhan; Bryan Lajoie; Carolyn A de Graaf; Mario Amendola; Geoffrey Fudenberg; Maxim Imakaev; Leonid A Mirny; Kees Jalink; Job Dekker; Alexander van Oudenaarden; Bas van Steensel
Journal:  Cell       Date:  2015-09-10       Impact factor: 41.582

10.  Insulator dysfunction and oncogene activation in IDH mutant gliomas.

Authors:  William A Flavahan; Yotam Drier; Brian B Liau; Shawn M Gillespie; Andrew S Venteicher; Anat O Stemmer-Rachamimov; Mario L Suvà; Bradley E Bernstein
Journal:  Nature       Date:  2015-12-23       Impact factor: 49.962
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  2 in total

1.  MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps.

Authors:  Yusen Ye; Lin Gao; Shihua Zhang
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

2.  Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures.

Authors:  Jincheol Park; Shili Lin
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622
  2 in total

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