Literature DB >> 28466442

Viral metagenomics analysis of feces from coronary heart disease patients reveals the genetic diversity of the Microviridae.

Lianghua Guo1, Xiuguo Hua1, Wen Zhang2, Shixing Yang2, Quan Shen2, Haibing Hu1, Jingjiao Li1, Zhijian Liu2, Xiaochun Wang2, Hua Wang2, Chenglin Zhou3, Li Cui4.   

Abstract

Recent studies have declared that members of the ssDNA virus family Microviridae play an important role in multiple environments, as they have been found taking a dominant position in the human gut. The aim of this study was to analyze the overall composition of the gut virome in coronary heart disease (CHD) patients, and try to discover the potential link between the human gut virome and CHD. Viral metagenomics methods were performed to detect the viral sequences in fecal samples collected from CHD inpatients and healthy persons as controls. We present the analysis of the virome composition in these CHD patients and controls. Our data shows that the virome composition may be linked to daily living habits and the medical therapy of CHD. Virgaviridae and Microviridae were the two dominant types of viruses found in the enteric virome of CHD patients. Fourteen divergent viruses belonging to the family Microviridae were found, twelve of which were grouped into the subfamily Gokushovirinae, while the remaining two strains might represent two new subfamilies within Microviridae, according to the phylogenetic analysis. In addition, the genomic organization of these viruses has been characterized.

Entities:  

Keywords:  Gokushovirinae; Microviridae; coronary heart disease (CHD); gut virome; viral metagenomics

Mesh:

Year:  2017        PMID: 28466442      PMCID: PMC6598973          DOI: 10.1007/s12250-016-3896-0

Source DB:  PubMed          Journal:  Virol Sin        ISSN: 1995-820X            Impact factor:   4.327


  29 in total

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Authors:  Min-Soo Kim; Eun-Jin Park; Seong Woon Roh; Jin-Woo Bae
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2.  Diversity and distribution of single-stranded DNA phages in the North Atlantic Ocean.

Authors:  Kimberly P Tucker; Rachel Parsons; Erin M Symonds; Mya Breitbart
Journal:  ISME J       Date:  2010-12-02       Impact factor: 10.302

3.  Microviridae, a family divided: isolation, characterization, and genome sequence of phiMH2K, a bacteriophage of the obligate intracellular parasitic bacterium Bdellovibrio bacteriovorus.

Authors:  Karie L Brentlinger; Susan Hafenstein; Christopher R Novak; Bentley A Fane; Robert Borgon; Robert McKenna; Mavis Agbandje-McKenna
Journal:  J Bacteriol       Date:  2002-02       Impact factor: 3.490

4.  High diversity of the viral community from an Antarctic lake.

Authors:  Alberto López-Bueno; Javier Tamames; David Velázquez; Andrés Moya; Antonio Quesada; Antonio Alcamí
Journal:  Science       Date:  2009-11-06       Impact factor: 47.728

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

6.  An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data.

Authors:  Xutao Deng; Samia N Naccache; Terry Ng; Scot Federman; Linlin Li; Charles Y Chiu; Eric L Delwart
Journal:  Nucleic Acids Res       Date:  2015-01-13       Impact factor: 16.971

7.  The fecal viral flora of wild rodents.

Authors:  Tung G Phan; Beatrix Kapusinszky; Chunlin Wang; Robert K Rose; Howard L Lipton; Eric L Delwart
Journal:  PLoS Pathog       Date:  2011-09-01       Impact factor: 6.823

8.  The marine viromes of four oceanic regions.

Authors:  Florent E Angly; Ben Felts; Mya Breitbart; Peter Salamon; Robert A Edwards; Craig Carlson; Amy M Chan; Matthew Haynes; Scott Kelley; Hong Liu; Joseph M Mahaffy; Jennifer E Mueller; Jim Nulton; Robert Olson; Rachel Parsons; Steve Rayhawk; Curtis A Suttle; Forest Rohwer
Journal:  PLoS Biol       Date:  2006-11       Impact factor: 8.029

9.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

Review 10.  The human gut microbiota and virome: Potential therapeutic implications.

Authors:  Emidio Scarpellini; Gianluca Ianiro; Fabia Attili; Chiara Bassanelli; Adriano De Santis; Antonio Gasbarrini
Journal:  Dig Liver Dis       Date:  2015-07-18       Impact factor: 4.088

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  7 in total

1.  Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta).

Authors:  Alexandria Creasy; Karyna Rosario; Brittany A Leigh; Larry J Dishaw; Mya Breitbart
Journal:  Viruses       Date:  2018-07-31       Impact factor: 5.048

2.  Gut virome of mammals and birds reveals high genetic diversity of the family Microviridae.

Authors:  Hao Wang; Yu Ling; Tongling Shan; Shixing Yang; Hui Xu; Xutao Deng; Eric Delwart; Wen Zhang
Journal:  Virus Evol       Date:  2019-06-08

3.  Choice of assembly software has a critical impact on virome characterisation.

Authors:  Thomas D S Sutton; Adam G Clooney; Feargal J Ryan; R Paul Ross; Colin Hill
Journal:  Microbiome       Date:  2019-01-28       Impact factor: 14.650

4.  Viral metagenomics reveals two novel anelloviruses in feces of experimental rats.

Authors:  Song-Yi Ning; Ming-Ming Zhou; Jie Yang; Jian Zeng; Jia-Ping Wang
Journal:  Virol J       Date:  2021-12-20       Impact factor: 4.099

5.  Phage-mediated horizontal gene transfer and its implications for the human gut microbiome.

Authors:  Tatiana Borodovich; Andrey N Shkoporov; R Paul Ross; Colin Hill
Journal:  Gastroenterol Rep (Oxf)       Date:  2022-04-13

6.  Genetic Predisposition of Anti-Cytomegalovirus Immunoglobulin G Levels and the Risk of 9 Cardiovascular Diseases.

Authors:  Jiang-Shan Tan; Jia-Meng Ren; Luyun Fan; Yuhao Wei; Song Hu; Sheng-Song Zhu; Yanmin Yang; Jun Cai
Journal:  Front Cell Infect Microbiol       Date:  2022-06-27       Impact factor: 6.073

7.  No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study.

Authors:  Michael Roach; Adrian Cantu; Melissa Krizia Vieri; Matthew Cotten; Paul Kellam; My Phan; Lia van der Hoek; Michel Mandro; Floribert Tepage; Germain Mambandu; Gisele Musinya; Anne Laudisoit; Robert Colebunders; Robert Edwards; John L Mokili
Journal:  Pathogens       Date:  2021-06-22
  7 in total

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