Literature DB >> 19892985

High diversity of the viral community from an Antarctic lake.

Alberto López-Bueno1, Javier Tamames, David Velázquez, Andrés Moya, Antonio Quesada, Antonio Alcamí.   

Abstract

Viruses are the most abundant biological entities and can control microbial communities, but their identity in terrestrial and freshwater Antarctic ecosystems is unknown. The genetic structure of an Antarctic lake viral community revealed unexpected genetic richness distributed across the highest number of viral families that have been found to date in aquatic viral metagenomes. In contrast to other known aquatic viromes, which are dominated by bacteriophage sequences, this Antarctic virus assemblage had a large proportion of sequences related to eukaryotic viruses, including phycodnaviruses and single-stranded DNA (ssDNA) viruses not previously identified in aquatic environments. We also observed that the transition from an ice-covered lake in spring to an open-water lake in summer led to a change from a ssDNA- to a double-stranded DNA-virus-dominated assemblage, possibly reflecting a seasonal shift in host organisms.

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Year:  2009        PMID: 19892985     DOI: 10.1126/science.1179287

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  144 in total

1.  Diversity and abundance of single-stranded DNA viruses in human feces.

Authors:  Min-Soo Kim; Eun-Jin Park; Seong Woon Roh; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

2.  Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere.

Authors:  Tae Woong Whon; Min-Soo Kim; Seong Woon Roh; Na-Ri Shin; Hae-Won Lee; Jin-Woo Bae
Journal:  J Virol       Date:  2012-05-23       Impact factor: 5.103

3.  Genome sequence of temperate bacteriophage Psymv2 from Antarctic Dry Valley soil isolate Psychrobacter sp. MV2.

Authors:  Tracy L Meiring; I Marla Tuffin; Craig Cary; Don A Cowan
Journal:  Extremophiles       Date:  2012-07-04       Impact factor: 2.395

4.  Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples.

Authors:  Jamie C Snyder; Mary M Bateson; Matthew Lavin; Mark J Young
Journal:  Appl Environ Microbiol       Date:  2010-09-17       Impact factor: 4.792

5.  Improvement of φ29 DNA polymerase amplification performance by fusion of DNA binding motifs.

Authors:  Miguel de Vega; José M Lázaro; Mario Mencía; Luis Blanco; Margarita Salas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-07       Impact factor: 11.205

6.  An integrative study of a meromictic lake ecosystem in Antarctica.

Authors:  Federico M Lauro; Matthew Z DeMaere; Sheree Yau; Mark V Brown; Charmaine Ng; David Wilkins; Mark J Raftery; John A E Gibson; Cynthia Andrews-Pfannkoch; Matthew Lewis; Jeffrey M Hoffman; Torsten Thomas; Ricardo Cavicchioli
Journal:  ISME J       Date:  2010-12-02       Impact factor: 10.302

7.  Metagenomic analysis of the viral communities in fermented foods.

Authors:  Eun-Jin Park; Kyoung-Ho Kim; Guy C J Abell; Min-Soo Kim; Seong Woon Roh; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2010-12-23       Impact factor: 4.792

Review 8.  Microbial ecology of the cryosphere: sea ice and glacial habitats.

Authors:  Antje Boetius; Alexandre M Anesio; Jody W Deming; Jill A Mikucki; Josephine Z Rapp
Journal:  Nat Rev Microbiol       Date:  2015-09-07       Impact factor: 60.633

9.  The Number of Target Molecules of the Amplification Step Limits Accuracy and Sensitivity in Ultradeep-Sequencing Viral Population Studies.

Authors:  Romain Gallet; Frédéric Fabre; Yannis Michalakis; Stéphane Blanc
Journal:  J Virol       Date:  2017-07-27       Impact factor: 5.103

10.  Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces.

Authors:  Linlin Li; Amit Kapoor; Beth Slikas; Oderinde Soji Bamidele; Chunlin Wang; Shahzad Shaukat; Muhammad Alam Masroor; Michael L Wilson; Jean-Bosco N Ndjango; Martine Peeters; Nicole D Gross-Camp; Martin N Muller; Beatrice H Hahn; Nathan D Wolfe; Hinda Triki; Joanne Bartkus; Sohail Zahoor Zaidi; Eric Delwart
Journal:  J Virol       Date:  2009-12-09       Impact factor: 5.103

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