Literature DB >> 28463400

Using 3dRNA for RNA 3-D Structure Prediction and Evaluation.

Jian Wang1, Yi Xiao1.   

Abstract

This unit describes how to use 3dRNA to predict RNA 3-D structures from their sequences and secondary (2-D) structures, and how to use 3dRNAscore to evaluate the predicted structures. The predicted RNA 3-D structures can be used to predict or understand their functions and can also be used to find the interactions between the RNA and other molecules. © 2017 by John Wiley & Sons, Inc.
Copyright © 2017 John Wiley & Sons, Inc.

Keywords:  3-D structure evaluation; 3-D structure prediction; 3dRNA; 3dRNAscore; RNA

Mesh:

Substances:

Year:  2017        PMID: 28463400     DOI: 10.1002/cpbi.21

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN: 1934-3396


  6 in total

1.  HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.

Authors:  Jiahua He; Jun Wang; Huanyu Tao; Yi Xiao; Sheng-You Huang
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

2.  Limits in accuracy and a strategy of RNA structure prediction using experimental information.

Authors:  Jian Wang; Benfeard Williams; Venkata R Chirasani; Andrey Krokhotin; Rajeshree Das; Nikolay V Dokholyan
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

3.  Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps.

Authors:  Doo Nam Kim; Dominik Gront; Karissa Y Sanbonmatsu
Journal:  J Chem Inf Model       Date:  2020-05-18       Impact factor: 4.956

Review 4.  LncRNA Structural Characteristics in Epigenetic Regulation.

Authors:  Chenguang Wang; Lianzong Wang; Yu Ding; Xiaoyan Lu; Guosi Zhang; Jiaxin Yang; Hewei Zheng; Hong Wang; Yongshuai Jiang; Liangde Xu
Journal:  Int J Mol Sci       Date:  2017-12-08       Impact factor: 5.923

5.  The Neuropeptide-Related HERC5/TAC1 Interactions May Be Associated with the Dysregulation of lncRNA GAS5 Expression in Gestational Diabetes Mellitus Exosomes.

Authors:  Gui-Yan Tang; Ping Yu; Chen Zhang; Hong-Yu Deng; Mei-Xiu Lu; Jiang-Hua Le
Journal:  Dis Markers       Date:  2022-02-08       Impact factor: 3.434

6.  Length-Dependent Deep Learning Model for RNA Secondary Structure Prediction.

Authors:  Kangkun Mao; Jun Wang; Yi Xiao
Journal:  Molecules       Date:  2022-02-02       Impact factor: 4.411

  6 in total

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