Literature DB >> 2845370

Codon usage in Pseudomonas aeruginosa.

S E West1, B H Iglewski.   

Abstract

We have generated a codon usage table for Pseudomonas aeruginosa. Codon usage in P. aeruginosa is extremely biased. In contrast to E. coli and yeast, P. aeruginosa preferentially uses those codons within a synonymous codon group with the strongest predicted codon-anticodon interaction. We were unable to correlate a particular codon usage pattern with predicted levels of mRNA expressivity. The choice of a third base reflects the high guanine plus cytosine content of the P. aeruginosa genome (67.2%) and cytosine is the preferred nucleotide for the third codon position.

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Year:  1988        PMID： 2845370      PMCID： PMC338709          DOI： 10.1093/nar/16.19.9323

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  52 in total

1.  The GenBank genetic sequence data bank.

Authors:  H S Bilofsky; C Burks
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

2.  Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products.

Authors:  G Theriault; P H Roy; K A Howard; J S Benner; J E Brooks; A F Waters; T R Gingeras
Journal:  Nucleic Acids Res       Date:  1985-12-09       Impact factor: 16.971

3.  Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1982-07-15       Impact factor: 5.469

4.  Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases.

Authors:  D C Shields; P M Sharp
Journal:  Nucleic Acids Res       Date:  1987-10-12       Impact factor: 16.971

5.  High guanine plus cytosine content in the third letter of codons of an extreme thermophile. DNA sequence of the isopropylmalate dehydrogenase of Thermus thermophilus.

Authors:  Y Kagawa; H Nojima; N Nukiwa; M Ishizuka; T Nakajima; T Yasuhara; T Tanaka; T Oshima
Journal:  J Biol Chem       Date:  1984-03-10       Impact factor: 5.157

6.  Pseudomonas aeruginosa outer membrane permeability: isolation of a porin protein F-deficient mutant.

Authors:  T I Nicas; R E Hancock
Journal:  J Bacteriol       Date:  1983-01       Impact factor: 3.490

7.  Preferential use of A- and U-rich codons for Mycoplasma capricolum ribosomal proteins S8 and L6.

Authors:  A Muto; Y Kawauchi; F Yamao; S Osawa
Journal:  Nucleic Acids Res       Date:  1984-11-12       Impact factor: 16.971

8.  Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli.

Authors:  W Konigsberg; G N Godson
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

Review 9.  Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.

Authors:  H Grosjean; W Fiers
Journal:  Gene       Date:  1982-06       Impact factor: 3.688

10.  Nucleotide sequence and transcriptional initiation site of two Pseudomonas aeruginosa pilin genes.

Authors:  K Johnson; M L Parker; S Lory
Journal:  J Biol Chem       Date:  1986-11-25       Impact factor: 5.157
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  99 in total

1.  Bioconversion of ferulic acid into vanillic acid by means of a vanillate-negative mutant of Pseudomonas fluorescens strain BF13.

Authors:  C Civolani; P Barghini; A R Roncetti; M Ruzzi; A Schiesser
Journal:  Appl Environ Microbiol       Date:  2000-06       Impact factor: 4.792

2.  A divergently transcribed open reading frame is located upstream of the Pseudomonas aeruginosa vfr gene, a homolog of Escherichia coli crp.

Authors:  L J Runyen-Janecky; A K Sample; T C Maleniak; S E West
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

3.  A new cluster of three tRNA genes in Pseudomonas aeruginosa.

Authors:  M Bally; G Ball; A Lazdunski
Journal:  Nucleic Acids Res       Date:  1992-07-25       Impact factor: 16.971

4.  Nucleotide sequence of the protein D2 gene of Pseudomonas aeruginosa.

Authors:  H Yoneyama; E Yoshihara; T Nakae
Journal:  Antimicrob Agents Chemother       Date:  1992-08       Impact factor: 5.191

5.  Glycine betaine transmethylase mutant of Pseudomonas aeruginosa.

Authors:  Ana L Serra; Javier F Mariscotti; José L Barra; Gloria I Lucchesi; Carlos E Domenech; Angela T Lisa
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

6.  Nucleotide sequence of the gene encoding the repressor for the histidine utilization genes of Pseudomonas putida.

Authors:  S L Allison; A T Phillips
Journal:  J Bacteriol       Date:  1990-09       Impact factor: 3.490

7.  Nucleotide sequence of the Pseudomonas aeruginosa phoB gene, the regulatory gene for the phosphate regulon.

Authors:  J Anba; M Bidaud; M L Vasil; A Lazdunski
Journal:  J Bacteriol       Date:  1990-08       Impact factor: 3.490

8.  Molecular comparison of a nonhemolytic and a hemolytic phospholipase C from Pseudomonas aeruginosa.

Authors:  R M Ostroff; A I Vasil; M L Vasil
Journal:  J Bacteriol       Date:  1990-10       Impact factor: 3.490

9.  Cloning, sequencing and analysis of the structural gene and regulatory region of the Pseudomonas aeruginosa chromosomal ampC beta-lactamase.

Authors:  J M Lodge; S D Minchin; L J Piddock; S J Busby
Journal:  Biochem J       Date:  1990-12-15       Impact factor: 3.857

10.  Molecular characterization of the extracellular poly(3-hydroxyoctanoic acid) [P(3HO)] depolymerase gene of Pseudomonas fluorescens GK13 and of its gene product.

Authors:  A Schirmer; D Jendrossek
Journal:  J Bacteriol       Date:  1994-11       Impact factor: 3.490
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