Literature DB >> 28448068

Addressing reproducibility in single-laboratory phenotyping experiments.

Neri Kafkafi1, Ilan Golani2, Iman Jaljuli1, Hugh Morgan3, Tal Sarig4, Hanno Würbel5, Shay Yaacoby1, Yoav Benjamini1,6.   

Abstract

Mesh:

Year:  2017        PMID: 28448068     DOI: 10.1038/nmeth.4259

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  7 in total

1.  Controlling the false discovery rate in behavior genetics research.

Authors:  Y Benjamini; D Drai; G Elmer; N Kafkafi; I Golani
Journal:  Behav Brain Res       Date:  2001-11-01       Impact factor: 3.332

2.  Genotype-environment interactions in mouse behavior: a way out of the problem.

Authors:  Neri Kafkafi; Yoav Benjamini; Anat Sakov; Greg I Elmer; Ilan Golani
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-11       Impact factor: 11.205

3.  Environmental standardization: cure or cause of poor reproducibility in animal experiments?

Authors:  S Helene Richter; Joseph P Garner; Hanno Würbel
Journal:  Nat Methods       Date:  2009-04       Impact factor: 28.547

4.  Genetics of mouse behavior: interactions with laboratory environment.

Authors:  J C Crabbe; D Wahlsten; B C Dudek
Journal:  Science       Date:  1999-06-04       Impact factor: 47.728

5.  Policy: NIH plans to enhance reproducibility.

Authors:  Francis S Collins; Lawrence A Tabak
Journal:  Nature       Date:  2014-01-30       Impact factor: 49.962

6.  Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics.

Authors:  Martin Hrabě de Angelis; George Nicholson; Mohammed Selloum; Jacqui White; Hugh Morgan; Ramiro Ramirez-Solis; Tania Sorg; Sara Wells; Helmut Fuchs; Martin Fray; Chris Holmes; Karen P Steel; Yann Herault; Valérie Gailus-Durner; Ann-Marie Mallon; Steve Dm Brown; David J Adams; Niels C Adams; Thure Adler; Antonio Aguilar-Pimentel; Dalila Ali-Hadji; Gregory Amann; Philippe André; Sarah Atkins; Aurelie Auburtin; Abdel Ayadi; Julien Becker; Lore Becker; Elodie Bedu; Raffi Bekeredjian; Marie-Christine Birling; Andrew Blake; Joanna Bottomley; Mike Bowl; Véronique Brault; Dirk H Busch; James N Bussell; Julia Calzada-Wack; Heather Cater; Marie-France Champy; Philippe Charles; Claire Chevalier; Francesco Chiani; Gemma F Codner; Roy Combe; Roger Cox; Emilie Dalloneau; André Dierich; Armida Di Fenza; Brendan Doe; Arnaud Duchon; Oliver Eickelberg; Chris T Esapa; Lahcen El Fertak; Tanja Feigel; Irina Emelyanova; Jeanne Estabel; Jack Favor; Ann Flenniken; Alessia Gambadoro; Lilian Garrett; Hilary Gates; Anna-Karin Gerdin; George Gkoutos; Simon Greenaway; Lisa Glasl; Patrice Goetz; Isabelle Goncalves Da Cruz; Alexander Götz; Jochen Graw; Alain Guimond; Wolfgang Hans; Geoff Hicks; Sabine M Hölter; Heinz Höfler; John M Hancock; Robert Hoehndorf; Tertius Hough; Richard Houghton; Anja Hurt; Boris Ivandic; Hughes Jacobs; Sylvie Jacquot; Nora Jones; Natasha A Karp; Hugo A Katus; Sharon Kitchen; Tanja Klein-Rodewald; Martin Klingenspor; Thomas Klopstock; Valerie Lalanne; Sophie Leblanc; Christoph Lengger; Elise le Marchand; Tonia Ludwig; Aline Lux; Colin McKerlie; Holger Maier; Jean-Louis Mandel; Susan Marschall; Manuel Mark; David G Melvin; Hamid Meziane; Kateryna Micklich; Christophe Mittelhauser; Laurent Monassier; David Moulaert; Stéphanie Muller; Beatrix Naton; Frauke Neff; Patrick M Nolan; Lauryl Mj Nutter; Markus Ollert; Guillaume Pavlovic; Natalia S Pellegata; Emilie Peter; Benoit Petit-Demoulière; Amanda Pickard; Christine Podrini; Paul Potter; Laurent Pouilly; Oliver Puk; David Richardson; Stephane Rousseau; Leticia Quintanilla-Fend; Mohamed M Quwailid; Ildiko Racz; Birgit Rathkolb; Fabrice Riet; Janet Rossant; Michel Roux; Jan Rozman; Ed Ryder; Jennifer Salisbury; Luis Santos; Karl-Heinz Schäble; Evelyn Schiller; Anja Schrewe; Holger Schulz; Ralf Steinkamp; Michelle Simon; Michelle Stewart; Claudia Stöger; Tobias Stöger; Minxuan Sun; David Sunter; Lydia Teboul; Isabelle Tilly; Glauco P Tocchini-Valentini; Monica Tost; Irina Treise; Laurent Vasseur; Emilie Velot; Daniela Vogt-Weisenhorn; Christelle Wagner; Alison Walling; Bruno Weber; Olivia Wendling; Henrik Westerberg; Monja Willershäuser; Eckhard Wolf; Anne Wolter; Joe Wood; Wolfgang Wurst; Ali Önder Yildirim; Ramona Zeh; Andreas Zimmer; Annemarie Zimprich
Journal:  Nat Genet       Date:  2015-07-27       Impact factor: 38.330

7.  The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data.

Authors:  Gautier Koscielny; Gagarine Yaikhom; Vivek Iyer; Terrence F Meehan; Hugh Morgan; Julian Atienza-Herrero; Andrew Blake; Chao-Kung Chen; Richard Easty; Armida Di Fenza; Tanja Fiegel; Mark Grifiths; Alan Horne; Natasha A Karp; Natalja Kurbatova; Jeremy C Mason; Peter Matthews; Darren J Oakley; Asfand Qazi; Jack Regnart; Ahmad Retha; Luis A Santos; Duncan J Sneddon; Jonathan Warren; Henrik Westerberg; Robert J Wilson; David G Melvin; Damian Smedley; Steve D M Brown; Paul Flicek; William C Skarnes; Ann-Marie Mallon; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2013-11-04       Impact factor: 16.971

  7 in total
  16 in total

1.  Reproducibility of animal research in light of biological variation.

Authors:  Bernhard Voelkl; Naomi S Altman; Anders Forsman; Wolfgang Forstmeier; Jessica Gurevitch; Ivana Jaric; Natasha A Karp; Martien J Kas; Holger Schielzeth; Tom Van de Casteele; Hanno Würbel
Journal:  Nat Rev Neurosci       Date:  2020-06-02       Impact factor: 34.870

Review 2.  CRISPR-Cas9: A Preclinical and Clinical Perspective for the Treatment of Human Diseases.

Authors:  Garima Sharma; Ashish Ranjan Sharma; Manojit Bhattacharya; Sang-Soo Lee; Chiranjib Chakraborty
Journal:  Mol Ther       Date:  2020-09-20       Impact factor: 11.454

3.  A reaction norm perspective on reproducibility.

Authors:  Bernhard Voelkl; Hanno Würbel
Journal:  Theory Biosci       Date:  2021-03-25       Impact factor: 1.919

4.  Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice.

Authors:  Molly A Bogue; Stephen C Grubb; David O Walton; Vivek M Philip; Georgi Kolishovski; Tim Stearns; Matthew H Dunn; Daniel A Skelly; Beena Kadakkuzha; Gregg TeHennepe; Govindarajan Kunde-Ramamoorthy; Elissa J Chesler
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

5.  Difficulties in modelling ARDS (2017 Grover Conference Series).

Authors:  Stefan Uhlig; Wolfgang M Kuebler
Journal:  Pulm Circ       Date:  2018-03-09       Impact factor: 3.017

6.  Reproducible preclinical research-Is embracing variability the answer?

Authors:  Natasha A Karp
Journal:  PLoS Biol       Date:  2018-03-05       Impact factor: 8.029

Review 7.  Reproducibility and replicability of rodent phenotyping in preclinical studies.

Authors:  Neri Kafkafi; Joseph Agassi; Elissa J Chesler; John C Crabbe; Wim E Crusio; David Eilam; Robert Gerlai; Ilan Golani; Alex Gomez-Marin; Ruth Heller; Fuad Iraqi; Iman Jaljuli; Natasha A Karp; Hugh Morgan; George Nicholson; Donald W Pfaff; S Helene Richter; Philip B Stark; Oliver Stiedl; Victoria Stodden; Lisa M Tarantino; Valter Tucci; William Valdar; Robert W Williams; Hanno Würbel; Yoav Benjamini
Journal:  Neurosci Biobehav Rev       Date:  2018-01-31       Impact factor: 9.052

8.  Internal consistency and compatibility of the 3Rs and 3Vs principles for project evaluation of animal research.

Authors:  Matthias Eggel; Hanno Würbel
Journal:  Lab Anim       Date:  2020-11-20       Impact factor: 2.471

Review 9.  Modeling human disease in rodents by CRISPR/Cas9 genome editing.

Authors:  Marie-Christine Birling; Yann Herault; Guillaume Pavlovic
Journal:  Mamm Genome       Date:  2017-07-04       Impact factor: 2.957

10.  Reproducibility of preclinical animal research improves with heterogeneity of study samples.

Authors:  Bernhard Voelkl; Lucile Vogt; Emily S Sena; Hanno Würbel
Journal:  PLoS Biol       Date:  2018-02-22       Impact factor: 8.029

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