Literature DB >> 28448048

Time-resolved ElectroSpray Ionization Hydrogen-deuterium Exchange Mass Spectrometry for Studying Protein Structure and Dynamics.

Cristina Lento1, Shaolong Zhu1, Kerene A Brown1, Ruth Knox1, Peter Liuni1, Derek J Wilson2.   

Abstract

Intrinsically disordered proteins (IDPs) have long been a challenge to structural biologists due to their lack of stable secondary structure elements. Hydrogen-Deuterium Exchange (HDX) measured at rapid time scales is uniquely suited to detect structures and hydrogen bonding networks that are briefly populated, allowing for the characterization of transient conformers in native ensembles. Coupling of HDX to mass spectrometry offers several key advantages, including high sensitivity, low sample consumption and no restriction on protein size. This technique has advanced greatly in the last several decades, including the ability to monitor HDX labeling times on the millisecond time scale. In addition, by incorporating the HDX workflow onto a microfluidic platform housing an acidic protease microreactor, we are able to localize dynamic properties at the peptide level. In this study, Time-Resolved ElectroSpray Ionization Mass Spectrometry (TRESI-MS) coupled to HDX was used to provide a detailed picture of residual structure in the tau protein, as well as the conformational shifts induced upon hyperphosphorylation.

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Year:  2017        PMID: 28448048      PMCID: PMC5564945          DOI: 10.3791/55464

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  32 in total

1.  FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification.

Authors:  Alexandre Gattiker; Willy V Bienvenut; Amos Bairoch; Elisabeth Gasteiger
Journal:  Proteomics       Date:  2002-10       Impact factor: 3.984

2.  Quantitative assessment of protein structural models by comparison of H/D exchange MS data with exchange behavior accurately predicted by DXCOREX.

Authors:  Tong Liu; Dennis Pantazatos; Sheng Li; Yoshitomo Hamuro; Vincent J Hilser; Virgil L Woods
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-20       Impact factor: 3.109

3.  Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors.

Authors:  V J Hilser; E Freire
Journal:  J Mol Biol       Date:  1996-10-11       Impact factor: 5.469

4.  Conformational changes in proteins probed by hydrogen-exchange electrospray-ionization mass spectrometry.

Authors:  V Katta; B T Chait
Journal:  Rapid Commun Mass Spectrom       Date:  1991-04       Impact factor: 2.419

5.  HDX-MS and deletion analysis of the type 4 secretion system protein TraF from the Escherichia coli F plasmid.

Authors:  Cristina Lento; Michele Ferraro; Derek Wilson; Gerald F Audette
Journal:  FEBS Lett       Date:  2016-02-03       Impact factor: 4.124

6.  mMass 3: a cross-platform software environment for precise analysis of mass spectrometric data.

Authors:  Martin Strohalm; Daniel Kavan; Petr Novák; Michael Volný; Vladimír Havlícek
Journal:  Anal Chem       Date:  2010-06-01       Impact factor: 6.986

7.  IL-1beta epitope mapping using site-directed mutagenesis and hydrogen-deuterium exchange mass spectrometry analysis.

Authors:  Jirong Lu; Derrick R Witcher; Melissa A White; Xiliang Wang; Lihua Huang; Radhakrishnan Rathnachalam; John M Beals; Stuart Kuhstoss
Journal:  Biochemistry       Date:  2005-08-23       Impact factor: 3.162

8.  Analysis of protein complexes with hydrogen exchange and mass spectrometry.

Authors:  John R Engen
Journal:  Analyst       Date:  2003-06       Impact factor: 4.616

9.  Enhanced digestion efficiency, peptide ionization efficiency, and sequence resolution for protein hydrogen/deuterium exchange monitored by Fourier transform ion cyclotron resonance mass spectrometry.

Authors:  Hui-Min Zhang; Sasa Kazazic; Tanner M Schaub; Jeremiah D Tipton; Mark R Emmett; Alan G Marshall
Journal:  Anal Chem       Date:  2008-12-01       Impact factor: 6.986

10.  Hyperphosphorylation of intrinsically disordered tau protein induces an amyloidogenic shift in its conformational ensemble.

Authors:  Shaolong Zhu; Agnesa Shala; Alexandr Bezginov; Adnan Sljoka; Gerald Audette; Derek J Wilson
Journal:  PLoS One       Date:  2015-03-13       Impact factor: 3.240

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  2 in total

Review 1.  Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems.

Authors:  Ellie I James; Taylor A Murphree; Clint Vorauer; John R Engen; Miklos Guttman
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

2.  Dynamics of Scabin toxin. A proposal for the binding mode of the DNA substrate.

Authors:  Miguel R Lugo; Bronwyn Lyons; Cristina Lento; Derek J Wilson; A Rod Merrill
Journal:  PLoS One       Date:  2018-03-15       Impact factor: 3.240

  2 in total

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