| Literature DB >> 28445942 |
Junyu Chen1,2, Wanlin Liu1,2, Yuju Cao3, Xiyang Zhang4, Yongchang Guo3, Yong Zhu1,2, Jian Li3, Jieli Du1,2, Tianbo Jin5,6,7, Guoqiang Wang1,2, Jianzhong Wang1,2.
Abstract
Our study investigated the association between MMP-3 and MMP-8 single-nucleotide polymorphisms (SNPs) and alcohol-induced osteonecrosis of the femoral head (ONFH) in 695 Chinese males (299 cases and 396 control subjects). The minor allele of MMP-3 rs650108 was associated with a 0.78-fold decrease in alcohol-induced ONFH risk in the allelic model (95% CI = 0.63-0.97, P = 0.026). In the genetic model adjusted for age, rs650108 was associated with decreased risk of alcohol-induced ONFH in the dominant model (OR = 0.68, 95% CI = 0.49-0.95, P = 0.022) and log-additive model (OR = 0.78, 95% CI = 0.63-0.98, P = 0.030); MMP-8 rs11225394 was associated with increased risk in the codominant model (OR = 1.72, 95% CI = 1.15-2.58, P= 0.010), dominant model (OR = 1.67, 95% CI = 1.12-2.48, P = 0.012), over-dominant model (OR = 1.73, 95% CI = 1.16-2.59, P = 0.007) and log-additive model (OR = 1.57, 95% CI= 1.07-2.32, P = 0.022); and MMP-8 rs2012390 was associated with decreased risk in the dominant model (OR = 0.72, 95% CI = 0.53-0.97, P = 0.032) and log-additive model (OR = 0.77, 95% CI = 0.60-0.98, P = 0.035). Haplotype analysis showed that the CGATATGT sequence mediated decreased alcohol-induced ONFH risk (OR = 0.75, 95% CI = 0.57-0.97, P = 0.029). Therefore, among Chinese males, MMP-3 rs650108 and MMP-8 rs2012390 decrease alcohol-induced ONFH risk and MMP-8 rs11225394 increases it. Further study is needed to validate our conclusion.Entities:
Keywords: MMP-3; MMP-8; alcohol-induced osteonecrosis of the femoral head; genetic; single-nucleotide polymorphism
Mesh:
Substances:
Year: 2017 PMID: 28445942 PMCID: PMC5421920 DOI: 10.18632/oncotarget.15587
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Characteristics of the male individuals in controls and alcohol-induced ONFH
| Group | N | Mean | Std. Deviation | Mean±SD | ||
|---|---|---|---|---|---|---|
| Age | Case | 299 | 43.24 | 13.07 | 43.24±13.07 | |
| Control | 396 | 47.62 | 10.28 | 47.62±10.28 |
* P values was calculated by Welch's t-tests
Basic SNP information summary of all the male individuals in our study
| Gene | SNP ID | Position | Band | Alleles Aa/B | MAF | Role | HWE- | OR(95%CI) | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||||
| MMP-3 | rs639752 | 102707339 | 11q22.3 | C/A | 0.31 | 0.36 | Intron | 0.27 | 0.82(0.65-1.02) | 0.079 |
| MMP-3 | rs650108 | 102708787 | 11q22.3 | G/A | 0.39 | 0.45 | Intron | 0.54 | 0.78(0.63-0.97) | 0.026* |
| MMP-3 | rs520540 | 102709425 | 11q22.3 | A/G | 0.31 | 0.36 | Coding exon | 0.27 | 0.82(0.65-1.02) | 0.079 |
| MMP-3 | rs646910 | 102709522 | 11q22.3 | A/T | 0.08 | 0.09 | Intron (boundary) | 0.76 | 0.83(0.57-1.23) | 0.354 |
| MMP-3 | rs602128 | 102713465 | 11q22.3 | A/G | 0.31 | 0.36 | Coding exon | 0.51 | 0.83(0.66-1.04) | 0.104 |
| MMP-3 | rs679620 | 102713620 | 11q22.3 | T/C | 0.31 | 0.36 | Coding exon | 0.44 | 0.81(0.65-1.02) | 0.074 |
| MMP-3 | rs678815 | 102713777 | 11q22.3 | G/C | 0.31 | 0.36 | Intron | 0.33 | 0.81(0.65-1.02) | 0.075 |
| MMP-3 | rs522616 | 102715048 | 11q22.3 | C/T | 0.39 | 0.34 | Promoter | 1.00 | 1.24(1.00-1.55) | 0.054 |
| MMP-8 | rs3740938 | 102587062 | 11q22.3 | A/G | 0.23 | 0.26 | Coding exon | 0.70 | 0.83(0.64-1.06) | 0.134 |
| MMP-8 | rs2012390 | 102590777 | 11q22.3 | G/A | 0.26 | 0.3 | Intron | 0.48 | 0.79(0.63-1.01) | 0.058 |
| MMP-8 | rs1940475 | 102593248 | 11q22.3 | T/C | 0.36 | 0.39 | Coding exon | 1.00 | 0.90(0.73-1.13) | 0.371 |
| MMP-8 | rs11225394 | 102595413 | 11q22.3 | T/C | 0.11 | 0.08 | Intron (boundary) | 1.00 | 1.42(0.98-2.05) | 0.059 |
| MMP-8 | rs11225395 | 102596480 | 11q22.3 | A/G | 0.35 | 0.38 | Promoter | 1.00 | 0.90(0.72-1.12) | 0.336 |
SNP, single nucleotide polymorphism; MAF, minor allele frequency; HWE, Hardy-Weinberg equilibrium; ORs, odds ratios; CI, confidence interval;
a Minor allele
b P were adjusted by gender and age, * P < 0.05, statistical significance
All the information of the primers in this case-control study
| Gene | SNP _ID | 1st-PCR primer sequences | 2nd-PCR primer sequences | UEP sequences |
|---|---|---|---|---|
| MMP-3 | rs639752 | ACGTTGGATGCAGATAAATTCTCCACTTGC | ACGTTGGATGGGCTGCAATGCAGGGAAAAG | tGGGAAGAAAGAAATAGGTGAT |
| MMP-3 | rs650108 | ACGTTGGATGGTCACTGTCTCATTGTGTGT | ACGTTGGATGTCAGGTAGAGGTGACAAGTG | tAAGTGGGTGAGGTTAGA |
| MMP-3 | rs520540 | ACGTTGGATGGCGAAAGGGCTTAACTGTTAT | ACGTTGGATGCCAGCTCGTACCTCATTTCC | CTCGTACCTCATTTCCTCTGAT |
| MMP-3 | rs646910 | ACGTTGGATGCCACTGTAAGCTGGTGACTA | ACGTTGGATGGTTAAGCCCTTTCGCTTTAG | CGCTTTAGAAATACACTTTAGCATCT |
| MMP-3 | rs602128 | ACGTTGGATGCTTCGGGATGCCAGGAAA | ACGTTGGATGAAGCTGGACTCCGACACTCT | CAGGTGTGGAGTTCCTGA |
| MMP-3 | rs679620 | ACGTTGGATGAACAGGACCACTGTCCTTTC | ACGTTGGATGAGAAATATCTAGAAAACTAC | tcTCTAGAAAACTACTACGACCTC |
| MMP-3 | rs678815 | ACGTTGGATGAATGCAACGTAATTTTAGC | ACGTTGGATGTGGAGTATTTCTCTAGCTTG | TCTCTAGCTTGCTGAAATAATG |
| MMP-3 | rs522616 | ACGTTGGATGCGTAGCTGCTCCATAAATAG | ACGTTGGATGACAGAGAGAATTTCAGTCCG | gaCGGTAAGCAATGTAATTCATTTCA |
| MMP-8 | rs3740938 | ACGTTGGATGGTCAGTAAGAGGAATCAAAG | ACGTTGGATGTGACATTTGATGCTATCAC | GATGCTATCACCACACT |
| MMP-8 | rs2012390 | ACGTTGGATGACTGTTTCTAGGTCACACCC | ACGTTGGATGTCAGGGAGAGGAAGCAATTC | gAAGCAAATGTGAGGAAGAT |
| MMP-8 | rs1940475 | ACGTTGGATGTTTGGGTTGAATGTGACGGG | ACGTTGGATGTAAAACCACCACTGTCAGGC | CTCCACAGCGAGGCTTTT |
| MMP-8 | rs11225394 | ACGTTGGATGCAATCTCAAACTAATCACCC | ACGTTGGATGTTAGGAAATAGTGTGGGTTG | AGTGTGGGTTGTTTTCTCTT |
| MMP-8 | rs11225395 | ACGTTGGATGAGAGCTGCTGCTCCACTATG | ACGTTGGATGGTTTAGAGAGACTGAGCTGG | gCTGAGCTGGGAGCTACTATA |
All the statistical power of the SNPs in this study
| SNP_ID | Gene(s) | case _n1 | control _n2 | case _A | control _A | case _p1 | contol _p2 | p | zβ | power |
|---|---|---|---|---|---|---|---|---|---|---|
| rs639752 | MMP3 | 598 | 792 | 186 | 186 | 0.311037 | 0.234848 | 0.267626 | 1.206173 | |
| rs650108 | MMP3 | 596 | 790 | 233 | 233 | 0.39094 | 0.294937 | 0.336219 | 1.777753 | |
| rs520540 | MMP3 | 598 | 792 | 186 | 186 | 0.311037 | 0.234848 | 0.267626 | 1.206173 | |
| rs646910 | MMP3 | 598 | 792 | 46 | 46 | 0.076923 | 0.058081 | 0.066187 | -0.55131 | 0.290709864 |
| rs602128 | MMP3 | 596 | 782 | 187 | 187 | 0.313758 | 0.23913 | 0.271408 | 1.117555 | |
| rs679620 | MMP3 | 598 | 792 | 187 | 187 | 0.312709 | 0.236111 | 0.269065 | 1.217832 | |
| rs678815 | MMP3 | 592 | 790 | 185 | 185 | 0.3125 | 0.234177 | 0.267728 | 1.282388 | |
| rs522616 | MMP3 | 598 | 790 | 236 | 236 | 0.394649 | 0.298734 | 0.340058 | 1.768172 | |
| rs3740938 | MMP8 | 598 | 790 | 135 | 135 | 0.225753 | 0.170886 | 0.194524 | 0.590001 | 0.722404948 |
| rs2012390 | MMP8 | 596 | 792 | 153 | 153 | 0.256711 | 0.193182 | 0.220461 | 0.85629 | |
| rs1940475 | MMP8 | 598 | 792 | 217 | 217 | 0.362876 | 0.27399 | 0.31223 | 1.571273 | |
| rs11225394 | MMP8 | 598 | 772 | 65 | 65 | 0.108696 | 0.084197 | 0.094891 | -0.41971 | 0.337347429 |
| rs11225395 | MMP8 | 598 | 792 | 210 | 210 | 0.351171 | 0.265152 | 0.302158 | 1.488018 |
Analysis of the association between SNPs and alcohol-induced ONFH risk in males (based on logistical tests)
| SNP ID | Model | Genotype | Group=control | Group=Alcohol | OR (95% CI) | AIC | BIC | |
|---|---|---|---|---|---|---|---|---|
| rs650108 (MMP-3) | Codominant | A/A | 116 (29.4%) | 112 (37.6%) | 1 | 0.064 | 947.6 | 961.2 |
| A/G | 202 (51.1%) | 139 (46.6%) | 0.71 (0.51-1.00) | |||||
| G/G | 77 (19.5%) | 47 (15.8%) | 0.63 (0.40-0.99) | |||||
| Dominant | A/A | 116 (29.4%) | 112 (37.6%) | 1 | 945.9 | 955 | ||
| A/G-G/G | 279 (70.6%) | 186 (62.4%) | 0.69 (0.50-0.95) | |||||
| Recessive | A/A-A/G | 318 (80.5%) | 251 (84.2%) | 1 | 0.200 | 949.5 | 958.5 | |
| G/G | 77 (19.5%) | 47 (15.8%) | 0.77 (0.52-1.15) | |||||
| Overdominant | A/A-G/G | 193 (48.9%) | 159 (53.4%) | 1 | 0.240 | 949.7 | 958.8 | |
| A/G | 202 (51.1%) | 139 (46.6%) | 0.84 (0.62-1.13) | |||||
| Log-additive | --- | --- | --- | 0.78 (0.63-0.97) | 946.1 | 955.2 | ||
| rs11225394 (MMP-8) | Codominant | C/C | 327 (84.7%) | 234 (78.3%) | 1 | 936.8 | 950.4 | |
| T/C | 57 (14.8%) | 65 (21.7%) | 1.59 (1.08-2.36) | |||||
| T/T | 2 (0.5%) | 0 (0%) | 0.00 (0.00-NA) | |||||
| Dominant | C/C | 327 (84.7%) | 234 (78.3%) | 1 | 937.8 | 946.9 | ||
| T/C-T/T | 59 (15.3%) | 65 (21.7%) | 1.54 (1.04-2.27) | |||||
| Recessive | C/C-T/C | 384 (99.5%) | 299 (100%) | 1 | 0.130 | 940.2 | 949.3 | |
| T/T | 2 (0.5%) | 0 (0%) | 0.00 (0.00-NA) | |||||
| Overdominant | C/C-T/T | 329 (85.2%) | 234 (78.3%) | 1 | 937 | 946 | ||
| T/C | 57 (14.8%) | 65 (21.7%) | 1.60 (1.08-2.38) | |||||
| Log-additive | --- | --- | --- | 1.46 (1.00-2.13) | 0.052 | 938.8 | 947.8 |
SNP, single nucleotide polymorphism; ORs, odds ratios; CI, confidence interval; AIC, Akaike's Information criterion; BIC, Bayesian Information criterion.
P value was calculated with logistic analysis. * P < 0.05, statistical significance.
Analysis of the association between SNPs and alcohol-induced ONFH risk in males (adjusted for age)
| SNP ID | Model | Genotype | Group=control | Group=Alcohol | OR (95% CI) | AIC | BIC | |
|---|---|---|---|---|---|---|---|---|
| rs650108 (MMP-3) | Codominant | A/A | 116 (29.4%) | 112 (37.6%) | 1 | 0.066 | 925.6 | 943.7 |
| A/G | 202 (51.1%) | 139 (46.6%) | 0.70 (0.49-0.98) | |||||
| G/G | 77 (19.5%) | 47 (15.8%) | 0.64 (0.41-1.01) | |||||
| Dominant | A/A | 116 (29.4%) | 112 (37.6%) | 1 | 923.7 | 937.3 | ||
| A/G-G/G | 279 (70.6%) | 186 (62.4%) | 0.68 (0.49-0.95) | |||||
| Recessive | A/A-A/G | 318 (80.5%) | 251 (84.2%) | 1 | 0.270 | 927.8 | 941.4 | |
| G/G | 77 (19.5%) | 47 (15.8%) | 0.80 (0.53-1.19) | |||||
| Overdominant | A/A-G/G | 193 (48.9%) | 159 (53.4%) | 1 | 0.190 | 927.2 | 940.9 | |
| A/G | 202 (51.1%) | 139 (46.6%) | 0.81 (0.60-1.11) | |||||
| Log-additive | --- | --- | --- | 0.78 (0.63-0.98) | 924.3 | 937.9 | ||
| rs2012390 (MMP-8) | Codominant | A/A | 189 (47.7%) | 165 (55.4%) | 1 | 0.095 | 928.2 | 946.4 |
| A/G | 174 (43.9%) | 113 (37.9%) | 0.73 (0.53-1.00) | |||||
| G/G | 33 (8.3%) | 20 (6.7%) | 0.65 (0.36-1.19) | |||||
| Dominant | A/A | 189 (47.7%) | 165 (55.4%) | 1 | 926.4 | 940 | ||
| A/G-G/G | 207 (52.3%) | 133 (44.6%) | 0.72 (0.53-0.97) | |||||
| Recessive | A/A-A/G | 363 (91.7%) | 278 (93.3%) | 1 | 0.330 | 930 | 943.6 | |
| G/G | 33 (8.3%) | 20 (6.7%) | 0.75 (0.42-1.35) | |||||
| Overdominant | A/A-G/G | 222 (56.1%) | 185 (62.1%) | 1 | 0.100 | 928.2 | 941.9 | |
| A/G | 174 (43.9%) | 113 (37.9%) | 0.77 (0.56-1.05) | |||||
| Log-additive | --- | --- | --- | 0.77 (0.60-0.98) | 926.5 | 940.1 | ||
| rs11225394 (MMP-8) | Codominant | C/C | 327 (84.7%) | 234 (78.3%) | 1 | 914.9 | 933 | |
| T/C | 57 (14.8%) | 65 (21.7%) | 1.72 (1.15-2.58) | |||||
| T/T | 2 (0.5%) | 0 (0%) | 0.00 (0.00-NA) | |||||
| Dominant | C/C | 327 (84.7%) | 234 (78.3%) | 1 | 915.8 | 929.4 | ||
| T/C-T/T | 59 (15.3%) | 65 (21.7%) | 1.67 (1.12-2.48) | |||||
| Recessive | C/C-T/C | 384 (99.5%) | 299 (100%) | 1 | 0.140 | 920 | 933.5 | |
| T/T | 2 (0.5%) | 0 (0%) | 0.00 (0.00-NA) | |||||
| Overdominant | C/C-T/T | 329 (85.2%) | 234 (78.3%) | 1 | 914.8 | 928.4 | ||
| T/C | 57 (14.8%) | 65 (21.7%) | 1.73 (1.16-2.59) | |||||
| Log-additive | --- | --- | --- | 1.57 (1.07-2.32) | 916.9 | 930.5 |
ORs, odds ratios; CI, confidence interval; AIC, Akaike's Information criterion; BIC, Bayesian Information criterion.
P value was adjusted by age and gender; * P < 0.05, statistical significance.
Figure 1We used the parameters r2 and D′ to analyze the linkage disequilibrium (LD) of the SNPs on MMP-3
Significant LD is indicated by bright red standard colors.
Haplotype association with response (n=695, adjusted by age)
| rs639752 | rs650108 | rs520540 | rs646910 | rs602128 | rs679620 | rs678815 | rs522616 | Freq | OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | A | A | G | T | G | C | C | C | 0.3655 | 1 | --- |
| 2 | C | G | A | T | A | T | G | T | 0.3367 | 0.75 (0.57 - 0.97) | |
| 3 | A | A | G | T | G | C | C | T | 0.2079 | 0.88 (0.65 - 1.18) | 0.380 |
| 4 | A | G | G | A | G | C | C | T | 0.0849 | 0.75 (0.50 - 1.14) | 0.190 |
| rare | * | * | * | * | * | * | * | * | 0.005 | 0.47 (0.08 - 2.75) | 0.400 |
Global haplotype association P-value: 0.19
rs639752, rs650108, rs520540, rs646910, rs602128, rs679620, rs678815 and rs522616 are on gene MMP-3
ORs, odds ratios; CI, confidence interval;
* P < 0.05, statistical significance.
Haplotype association with response (n=695, adjusted by age)
| rs3740938 | rs2012390 | rs1940475 | rs11225394 | rs11225395 | Freq | OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|
| 1 | G | A | C | C | G | 0.6226 | 1 | --- |
| 2 | A | G | T | C | A | 0.2457 | 0.81 (0.62 - 1.05) | 0.12 |
| 3 | G | A | T | T | A | 0.0928 | 1.37 (0.93 - 2.03) | 0.11 |
| 4 | G | G | T | C | A | 0.0267 | 0.55 (0.26 - 1.13) | 0.11 |
| 5 | G | G | T | C | G | 0.0108 | 1.02 (0.35 - 2.97) | 0.97 |
Global haplotype association p-value: 0.021
Figure 2We used the parameters r2 and D′’ to analyze the linkage disequilibrium (LD) of the SNPs on MMP-8
Significant LD is indicated by bright red standard colors.