Literature DB >> 28438579

The BRENDA enzyme information system-From a database to an expert system.

I Schomburg1, L Jeske1, M Ulbrich1, S Placzek1, A Chang1, D Schomburg2.   

Abstract

Enzymes, representing the largest and by far most complex group of proteins, play an essential role in all processes of life, including metabolism, gene expression, cell division, the immune system, and others. Their function, also connected to most diseases or stress control makes them interesting targets for research and applications in biotechnology, medical treatments, or diagnosis. Their functional parameters and other properties are collected, integrated, and made available to the scientific community in the BRaunschweig ENzyme DAtabase (BRENDA). In the last 30 years BRENDA has developed into one of the most highly used biological databases worldwide. The data contents, the process of data acquisition, data integration and control, the ways to access the data, and visualizations provided by the website are described and discussed.
Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Keywords:  Enzyme database; Enzyme kinetics; Enzyme-catalysed reactions; Enzyme-ligand interaction; Enzymes and diseases; Metabolic pathways

Mesh:

Substances:

Year:  2017        PMID: 28438579     DOI: 10.1016/j.jbiotec.2017.04.020

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  37 in total

1.  Neutron and X-ray crystal structures of Lactobacillus brevis alcohol dehydrogenase reveal new insights into hydrogen-bonding pathways.

Authors:  Johannes Hermann; Phillip Nowotny; Tobias E Schrader; Philipp Biggel; Dariusch Hekmat; Dirk Weuster-Botz
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-11-26       Impact factor: 1.056

Review 2.  The human endogenous metabolome as a pharmacology baseline for drug discovery.

Authors:  Andreu Bofill; Xavier Jalencas; Tudor I Oprea; Jordi Mestres
Journal:  Drug Discov Today       Date:  2019-06-19       Impact factor: 7.851

3.  Receptor pharmacophore ensemble (REPHARMBLE): a probabilistic pharmacophore modeling approach using multiple protein-ligand complexes.

Authors:  Sivakumar Prasanth Kumar
Journal:  J Mol Model       Date:  2018-09-15       Impact factor: 1.810

4.  Improved enzyme annotation with EC-specific cutoffs using DETECT v2.

Authors:  Nirvana Nursimulu; Leon L Xu; James D Wasmuth; Ivan Krukov; John Parkinson
Journal:  Bioinformatics       Date:  2018-10-01       Impact factor: 6.937

5.  A Novel Tyrosinase from Armillaria ostoyae with Comparable Monophenolase and Diphenolase Activities Suffers Substrate Inhibition.

Authors:  Tang Li; Ningning Zhang; Shenggang Yan; Shan Jiang; Heng Yin
Journal:  Appl Environ Microbiol       Date:  2021-05-26       Impact factor: 4.792

6.  Understanding the Xylooligosaccharides Utilization Mechanism of Lactobacillus brevis and Bifidobacterium adolescentis: Proteins Involved and Their Conformational Stabilities for Effectual Binding.

Authors:  Ishu Khangwal; Sinosh Skariyachan; Akshay Uttarkar; Aditi G Muddebihalkar; Vidya Niranjan; Pratyoosh Shukla
Journal:  Mol Biotechnol       Date:  2021-09-20       Impact factor: 2.695

7.  Identification of immucillin analogue natural compounds to inhibit Helicobacter pylori MTAN through high throughput virtual screening and molecular dynamics simulation.

Authors:  Divya S Raj; Chidhambara Priya Dharshini Kottaisamy; Waheetha Hopper; Umamaheswari Sankaran
Journal:  In Silico Pharmacol       Date:  2021-03-11

8.  Comparative structural analysis of bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase from Bordetella pertussis and Bordetella parapertussis: a drug target against pertussis.

Authors:  Hari Om Sharn; Dev Bukhsh Singh; Satendra Singh
Journal:  In Silico Pharmacol       Date:  2021-01-05

9.  Diet-derived fruit and vegetable metabolites show sex-specific inverse relationships to osteoporosis status.

Authors:  Kelsey M Mangano; Sabrina E Noel; Chao-Qiang Lai; Jacob J Christensen; Jose M Ordovas; Bess Dawson-Hughes; Katherine L Tucker; Laurence D Parnell
Journal:  Bone       Date:  2020-12-02       Impact factor: 4.398

Review 10.  Cardiovascular informatics: building a bridge to data harmony.

Authors:  John Harry Caufield; Dibakar Sigdel; John Fu; Howard Choi; Vladimir Guevara-Gonzalez; Ding Wang; Peipei Ping
Journal:  Cardiovasc Res       Date:  2022-02-21       Impact factor: 13.081

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