Literature DB >> 28429156

Crystallization and Preliminary X-Ray Diffraction Analysis of a Mammal Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase.

Elsa Franco-Echevarría1, Julia Sanz-Aparicio1, Nathalie Troffer-Charlier2, Arnaud Poterszman2, Beatriz González3.   

Abstract

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase (IP5 2-K) is an enzyme that catalyses the formation of phytic acid (IP6) from IP5 and ATP. In mammals, IP6 is involved in multiple events such as DNA repair and mRNA edit and it is the precursor of inositol pyrophosphates, emerging compounds shown to have an essential role in apoptosis. In addition, IP5 2-K have functions in cells independently of its catalytic activity, for example in rRNA biogenesis. We pursue the structure determination of a mammal IP5 2-K by Protein Crystallography. For this purpose, we have designed protocols for recombinant expression and purification of Mus musculus IP5 2-K (mIP5 2-K). The recombinant protein has been expressed in two different hosts, E. coli and insect cells using the LSLt and GST fusion proteins, respectively. Both macromolecule preparations yielded crystals of similar quality. Best crystals diffracted to 4.3 Å (E. coli expression) and 4.0 Å (insect cells expression) maximum resolution. Both type of crystals belong to space group P212121 with an estimated solvent content compatible with the presence of two molecules per asymmetric unit. Gel filtration experiments are in agreement with this enzyme being a monomer. Crystallographic data analysis is currently undergoing.

Entities:  

Keywords:  IP5 2-K; IP6; Inositol hexakisphosphate; Inositol kinase; Mammal IPK; X-ray crystallography

Mesh:

Substances:

Year:  2017        PMID: 28429156     DOI: 10.1007/s10930-017-9717-y

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  30 in total

1.  Inositol 1,3,4,5,6-pentakisphosphate 2-kinase is a distant IPK member with a singular inositide binding site for axial 2-OH recognition.

Authors:  Beatriz González; Jose Ignacio Baños-Sanz; Maider Villate; Charles Alistair Brearley; Julia Sanz-Aparicio
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-07       Impact factor: 11.205

2.  A set of baculovirus transfer vectors for screening of affinity tags and parallel expression strategies.

Authors:  Wassim Abdulrahman; Muriel Uhring; Isabelle Kolb-Cheynel; Jean-Marie Garnier; Dino Moras; Natacha Rochel; Didier Busso; Arnaud Poterszman
Journal:  Anal Biochem       Date:  2008-11-07       Impact factor: 3.365

Review 3.  Insect cells-baculovirus system for the production of difficult to express proteins.

Authors:  Judit Osz-Papai; Laura Radu; Wassim Abdulrahman; Isabelle Kolb-Cheynel; Nathalie Troffer-Charlier; Catherine Birck; Arnaud Poterszman
Journal:  Methods Mol Biol       Date:  2015

4.  Inositol phosphate-induced stabilization of inositol 1,3,4,5,6-pentakisphosphate 2-kinase and its role in substrate specificity.

Authors:  Varin Gosein; Ting-Fung Leung; Oren Krajden; Gregory J Miller
Journal:  Protein Sci       Date:  2012-03-29       Impact factor: 6.725

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Biochemical and functional characterization of inositol 1,3,4,5, 6-pentakisphosphate 2-kinases.

Authors:  E B Ives; J Nichols; S R Wente; J D York
Journal:  J Biol Chem       Date:  2000-11-24       Impact factor: 5.157

7.  Conformational stability of inositol 1,3,4,5,6-pentakisphosphate 2-kinase (IPK1) dictates its substrate selectivity.

Authors:  Varin Gosein; Gregory J Miller
Journal:  J Biol Chem       Date:  2013-10-28       Impact factor: 5.157

8.  Roles of phosphate recognition in inositol 1,3,4,5,6-pentakisphosphate 2-kinase (IPK1) substrate binding and activation.

Authors:  Varin Gosein; Gregory J Miller
Journal:  J Biol Chem       Date:  2013-07-24       Impact factor: 5.157

9.  Inositol hexakisphosphate (IP6) generated by IP5K mediates cullin-COP9 signalosome interactions and CRL function.

Authors:  Paul C Scherer; Yan Ding; Zhiqing Liu; Jing Xu; Haibin Mao; James C Barrow; Ning Wei; Ning Zheng; Solomon H Snyder; Feng Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-14       Impact factor: 11.205

10.  Developments in optics and performance at BL13-XALOC, the macromolecular crystallography beamline at the ALBA synchrotron.

Authors:  Jordi Juanhuix; Fernando Gil-Ortiz; Guifré Cuní; Carles Colldelram; Josep Nicolás; Julio Lidón; Eva Boter; Claude Ruget; Salvador Ferrer; Jordi Benach
Journal:  J Synchrotron Radiat       Date:  2014-05-20       Impact factor: 2.616

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  2 in total

1.  The crystal structure of mammalian inositol 1,3,4,5,6-pentakisphosphate 2-kinase reveals a new zinc-binding site and key features for protein function.

Authors:  Elsa Franco-Echevarría; Julia Sanz-Aparicio; Charles A Brearley; Juana M González-Rubio; Beatriz González
Journal:  J Biol Chem       Date:  2017-04-27       Impact factor: 5.157

Review 2.  Inositol Phosphates and Retroviral Assembly: A Cellular Perspective.

Authors:  Clifton L Ricaña; Robert A Dick
Journal:  Viruses       Date:  2021-12-15       Impact factor: 5.048

  2 in total

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