Literature DB >> 28428307

Draft Genome Sequences of Three Listeria monocytogenes Isolates from Foods in China.

Xudong Su1, Guojie Cao2, Dai Kuang1, Jianmin Zhang3, Yi Chen2, Marc Allard2, Eric Brown2, Xianming Shi1, Jianghong Meng1,4, Xuebin Xu5.   

Abstract

Listeria monocytogenes is a foodborne pathogen of global concern because of the high mortality rate among patients. The draft genome sequences of three L. monocytogenes strains isolated from foods are reported here. The availability of these genomes should provide useful information on the genomic diversity of L. monocytogenes isolated from foods in China.
Copyright © 2017 Su et al.

Entities:  

Year:  2017        PMID: 28428307      PMCID: PMC5399266          DOI: 10.1128/genomeA.00220-17

Source DB:  PubMed          Journal:  Genome Announc


GENOME ANNOUNCEMENT

Listeria monocytogenes is an important foodborne pathogen causing severe illness, such as septicemia and meningitis, among pregnant women, elderly people, and immunocompromised individuals (1, 2). L. monocytogenes is ubiquitous and has been reportedly isolated from a wide range of foods, including meat, poultry, dairy products, fruit, and vegetables (3, 4). Whole-genome sequencing has become an essential tool for investigating the evolution, diversity, and pathogenicity of foodborne bacterial pathogens (5–9). The draft genome sequences of three L. monocytogenes strains from foods in the Shanghai area of China are reported here. Genomic DNA was isolated from overnight cultures and sequenced using MiSeq (Illumina, San Diego, CA) to obtain draft genomes. Genomic data were assembled using SOAPdenovo version 2 (10), including the serotype 1/2c strain SHL12-2 (16 contigs, 3.01 Mb, 583,457 bp N50 contig size, and 2,978 identified genes), serotype 1/2a strain SHL12-22 (20 contigs, 3.02 Mb, 506,776 bp N50 contig size, and 2,943 identified genes), and serotype 1/2a strain SHL13-12 (17 contigs, 2.99 Mb, 524,215 bp N50 contig size, and 2,884 identified genes). These sequences were annotated using the NCBI Prokaryotic Genome Annotation Pipeline (11).

Accession number(s).

These three draft genome sequences have been deposited in GenBank under the accession numbers LRTW00000000, LRTX00000000, and LRTY00000000.
  11 in total

1.  Identification of a salmonellosis outbreak by means of molecular sequencing.

Authors:  E Kurt Lienau; Errol Strain; Charles Wang; Jie Zheng; Andrea R Ottesen; Christine E Keys; Thomas S Hammack; Steven M Musser; Eric W Brown; Marc W Allard; Guojie Cao; Jianghong Meng; Robert Stones
Journal:  N Engl J Med       Date:  2011-02-23       Impact factor: 91.245

2.  Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing.

Authors:  Wenting Ju; Guojie Cao; Lydia Rump; Errol Strain; Yan Luo; Ruth Timme; Marc Allard; Shaohua Zhao; Eric Brown; Jianghong Meng
Journal:  J Clin Microbiol       Date:  2012-10-10       Impact factor: 5.948

3.  Characterization of Listeria monocytogenes isolated from retail foods.

Authors:  Yifan Zhang; Emily Yeh; Grace Hall; Jennifer Cripe; Arvind A Bhagwat; Jianghong Meng
Journal:  Int J Food Microbiol       Date:  2006-09-22       Impact factor: 5.277

4.  L. monocytogenes in a cheese processing facility: Learning from contamination scenarios over three years of sampling.

Authors:  I Rückerl; M Muhterem-Uyar; S Muri-Klinger; K-H Wagner; M Wagner; B Stessl
Journal:  Int J Food Microbiol       Date:  2014-08-07       Impact factor: 5.277

Review 5.  Illuminating the landscape of host-pathogen interactions with the bacterium Listeria monocytogenes.

Authors:  Pascale Cossart
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-23       Impact factor: 11.205

6.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

7.  Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing.

Authors:  Guojie Cao; Jianghong Meng; Errol Strain; Robert Stones; James Pettengill; Shaohua Zhao; Patrick McDermott; Eric Brown; Marc Allard
Journal:  PLoS One       Date:  2013-02-11       Impact factor: 3.240

8.  Evolution and Diversity of Listeria monocytogenes from Clinical and Food Samples in Shanghai, China.

Authors:  Jianmin Zhang; Guojie Cao; Xuebin Xu; Marc Allard; Peng Li; Eric Brown; Xiaowei Yang; Haijian Pan; Jianghong Meng
Journal:  Front Microbiol       Date:  2016-07-22       Impact factor: 5.640

9.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

10.  Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing.

Authors:  Yi Chen; Laurel S Burall; Yan Luo; Ruth Timme; David Melka; Tim Muruvanda; Justin Payne; Charles Wang; George Kastanis; Anna Maounounen-Laasri; Antonio J De Jesus; Phillip E Curry; Robert Stones; Okumu K'Aluoch; Eileen Liu; Monique Salter; Thomas S Hammack; Peter S Evans; Mickey Parish; Marc W Allard; Atin Datta; Errol A Strain; Eric W Brown
Journal:  Appl Environ Microbiol       Date:  2016-11-21       Impact factor: 4.792

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  1 in total

1.  Characterization of internalin genes in Listeria monocytogenes from food and humans, and their association with the invasion of Caco-2 cells.

Authors:  Xudong Su; Guojie Cao; Jianmin Zhang; Haijian Pan; Daofeng Zhang; Dai Kuang; Xiaowei Yang; Xuebin Xu; Xianming Shi; Jianghong Meng
Journal:  Gut Pathog       Date:  2019-06-10       Impact factor: 4.181

  1 in total

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