Literature DB >> 23052305

Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing.

Wenting Ju1, Guojie Cao, Lydia Rump, Errol Strain, Yan Luo, Ruth Timme, Marc Allard, Shaohua Zhao, Eric Brown, Jianghong Meng.   

Abstract

Non-O157 Shiga toxin-producing Escherichia coli (STEC) strains are emerging food-borne pathogens causing life-threatening diseases and food-borne outbreaks. A better understanding of their evolution provides a framework for developing tools to control food safety. We obtained 15 genomes of non-O157 STEC strains, including O26, O111, and O103 strains. Phylogenetic trees revealed a close relationship between O26:H11 and O111:H11 and a scattered distribution of O111. We hypothesize that STEC serotypes with the same H antigens might share common ancestors.

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Year:  2012        PMID： 23052305      PMCID： PMC3502965          DOI： 10.1128/JCM.02262-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  20 in total

1.  Acquisition of the rfb-gnd cluster in evolution of Escherichia coli O55 and O157.

Authors:  P I Tarr; L M Schoening; Y L Yea; T R Ward; S Jelacic; T S Whittam
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

2.  Mauve: multiple alignment of conserved genomic sequence with rearrangements.

Authors:  Aaron C E Darling; Bob Mau; Frederick R Blattner; Nicole T Perna
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

3.  BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data.

Authors:  O Gascuel
Journal:  Mol Biol Evol       Date:  1997-07       Impact factor: 16.240

4.  Genotypic and phenotypic changes in the emergence of Escherichia coli O157:H7.

Authors:  P Feng; K A Lampel; H Karch; T S Whittam
Journal:  J Infect Dis       Date:  1998-06       Impact factor: 5.226

5.  Non-O157 Shiga toxin-producing Escherichia coli infections in the United States, 1983-2002.

Authors:  John T Brooks; Evangeline G Sowers; Joy G Wells; Katherine D Greene; Patricia M Griffin; Robert M Hoekstra; Nancy A Strockbine
Journal:  J Infect Dis       Date:  2005-09-14       Impact factor: 5.226

Review 6.  Enterohaemorrhagic Escherichia coli: emerging issues on virulence and modes of transmission.

Authors:  Alfredo Caprioli; Stefano Morabito; Hubert Brugère; Eric Oswald
Journal:  Vet Res       Date:  2005 May-Jun       Impact factor: 3.683

7.  Molecular characterization reveals three distinct clonal groups among clinical shiga toxin-producing Escherichia coli strains of serogroup O103.

Authors:  Atsushi Iguchi; Sunao Iyoda; Makoto Ohnishi
Journal:  J Clin Microbiol       Date:  2012-06-20       Impact factor: 5.948

Review 8.  The non-O157 shiga-toxigenic (verocytotoxigenic) Escherichia coli; under-rated pathogens.

Authors:  Karl A Bettelheim
Journal:  Crit Rev Microbiol       Date:  2007       Impact factor: 7.624

9.  Serotypes, virulence genes, and intimin types of Shiga toxin (verotoxin)-producing Escherichia coli isolates from human patients: prevalence in Lugo, Spain, from 1992 through 1999.

Authors:  J E Blanco; M Blanco; M P Alonso; A Mora; G Dahbi; M A Coira; J Blanco
Journal:  J Clin Microbiol       Date:  2004-01       Impact factor: 5.948

10.  Prolonged fecal shedding of Shiga toxin-producing Escherichia coli among children attending day-care centers in Argentina.

Authors:  E Miliwebsky; N Deza; I Chinen; E Martinez Espinosa; D Gomez; E Pedroni; L Caprile; A Bashckier; E Manfredi; G Leotta; M Rivas
Journal:  Rev Argent Microbiol       Date:  2007 Apr-Jun       Impact factor: 1.852
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  24 in total

1.  Association of clustered regularly interspaced short palindromic repeat (CRISPR) elements with specific serotypes and virulence potential of shiga toxin-producing Escherichia coli.

Authors:  Magaly Toro; Guojie Cao; Wenting Ju; Marc Allard; Rodolphe Barrangou; Shaohua Zhao; Eric Brown; Jianghong Meng
Journal:  Appl Environ Microbiol       Date:  2013-12-13       Impact factor: 4.792

2.  Phylogenetic analysis of Escherichia coli isolated from broilers with colibacillosis based on gyrA gene sequences.

Authors:  Hamid Shamsi; Karim Mardani; Abdolghaffar Ownagh
Journal:  Can J Vet Res       Date:  2017-01       Impact factor: 1.310

3.  Genomic diversity and virulence profiles of historical Escherichia coli O157 strains isolated from clinical and environmental sources.

Authors:  Lydia V Rump; Narjol Gonzalez-Escalona; Wenting Ju; Fei Wang; Guojie Cao; Sean Meng; Jianghong Meng
Journal:  Appl Environ Microbiol       Date:  2014-11-07       Impact factor: 4.792

4.  An Environmental Shiga Toxin-Producing Escherichia coli O145 Clonal Population Exhibits High-Level Phenotypic Variation That Includes Virulence Traits.

Authors:  Michelle Qiu Carter; Beatriz Quinones; Xiaohua He; Wayne Zhong; Jacqueline W Louie; Bertram G Lee; Jaszemyn C Yambao; Robert E Mandrell; Michael B Cooley
Journal:  Appl Environ Microbiol       Date:  2015-12-04       Impact factor: 4.792

5.  Genome Sequences of 64 Non-O157:H7 Shiga Toxin-Producing Escherichia coli Strains.

Authors:  Magaly Toro; Guojie Cao; Lydia Rump; T G Nagaraja; Jianghong Meng; Narjol Gonzalez-Escalona
Journal:  Genome Announc       Date:  2015-10-01

6.  Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters.

Authors:  Ruth E Timme; James B Pettengill; Marc W Allard; Errol Strain; Rodolphe Barrangou; Chris Wehnes; Joann S Van Kessel; Jeffrey S Karns; Steven M Musser; Eric W Brown
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

7.  Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7.

Authors:  Kerry K Cooper; Robert E Mandrell; Jacqueline W Louie; Jonas Korlach; Tyson A Clark; Craig T Parker; Steven Huynh; Patrick S Chain; Sanaa Ahmed; Michelle Qiu Carter
Journal:  BMC Genomics       Date:  2014-01-10       Impact factor: 3.969

8.  Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains.

Authors:  Keri N Norman; Michael L Clawson; Nancy A Strockbine; Robert E Mandrell; Roger Johnson; Kim Ziebell; Shaohua Zhao; Pina M Fratamico; Robert Stones; Marc W Allard; James L Bono
Journal:  Front Cell Infect Microbiol       Date:  2015-03-11       Impact factor: 5.293

9.  Highly Virulent Non-O157 Enterohemorrhagic Escherichia coli (EHEC) Serotypes Reflect Similar Phylogenetic Lineages, Providing New Insights into the Evolution of EHEC.

Authors:  Inga Eichhorn; Katrin Heidemanns; Torsten Semmler; Bianca Kinnemann; Alexander Mellmann; Dag Harmsen; Muna F Anjum; Herbert Schmidt; Angelika Fruth; Peter Valentin-Weigand; Jürgen Heesemann; Sebastian Suerbaum; Helge Karch; Lothar H Wieler
Journal:  Appl Environ Microbiol       Date:  2015-07-31       Impact factor: 4.792

10.  Evolution of enterohemorrhagic escherichia coli O26 based on single-nucleotide polymorphisms.

Authors:  Stefan Bletz; Martina Bielaszewska; Shana R Leopold; Robin Köck; Anika Witten; Jörg Schuldes; Wenlan Zhang; Helge Karch; Alexander Mellmann
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416
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