| Literature DB >> 28427387 |
Yajie Zhang1,2, Min Li3, Yijiang Ding4, Zhimin Fan4, Jinchun Zhang5, Hongying Zhang6, Bin Jiang7, Yong Zhu8.
Abstract
BACKGROUND: Colon cancer, one of the most common causes of cancer-related deaths, arises from adenomatous polyps. In these years, circulating microRNAs (miRNAs) have attracted increasing attention as novel biomarkers for colon cancers. The dysregulated circulating miRNAs in patients with colon adenomas has not been well-understood.Entities:
Keywords: Adenomas; Colon cancer; Serum miRNAs
Mesh:
Substances:
Year: 2017 PMID: 28427387 PMCID: PMC5399348 DOI: 10.1186/s12920-017-0260-7
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
Clinical and histopathological characteristics of the colon adenoma patients, colon cancer patients and health controls
| Characteristics | Health | Adenoma | Cancer |
| |
|---|---|---|---|---|---|
| Sex | Male | 11 | 11 | 12 | 0.934 |
| Female | 9 | 9 | 8 | ||
| Age | ≤60 | 10 | 10 | 12 | 0.765 |
| >60 | 10 | 10 | 8 | ||
| Histological grade | Low | – | 20 | 8 | 0.00 |
| Middle or high | – | 0 | 12 | ||
| Tumor invasion depth (T) | T1/T2 | – | 20 | 9 | 0.00 |
| T3/T4 | – | 0 | 11 | ||
| Lymph node metastasis (N) | Yes | – | 0 | 12 | 0.00 |
| No | – | 20 | 8 | ||
| TNM stage | I/II | – | 20 | 9 | 0.00 |
| III/IV | – | 0 | 11 | ||
Fig. 1miRNA expression profiles of serum specimens from patients with colon adenoma (Adenomas, group B) or colon cancer (Cancer, group C) and healthy subjects (Normal, group A). a The volcano plots of DEMs between Adenomas and Normal, Cancer and Normal, and Cancer and Adenomas. The vertical lines correspond to 2.0-fold up and down, respectively, and the horizontal line represents a P-value of 0.05. So the red point in the plot represents the DEMs with statistical significance. b The hierarchical clustering analysis of DEMs is shown. See also Additional file 1: Tables S1-S3
DEMs identified from Adenomas (B) vs. Normal control (A) comparison
| ID | Fold change |
| FDR | |
|---|---|---|---|---|
| Up-regulated | hsa-miR-3171 | 6.61 | 0.0431 | 0.7509 |
| hsa-miR-198 | 3.89 | 0.0044 | 0.6526 | |
| hsa-miR-758-5p | 3.25 | 0.0095 | 0.6526 | |
| hsa-miR-320c | 2.93 | 0.0287 | 0.6577 | |
| hsa-miR-4486 | 2.77 | 0.0142 | 0.6526 | |
| hsa-miR-1182 | 2.57 | 0.0106 | 0.6526 | |
| hsa-miR-2392 | 2.54 | 0.0458 | 0.7509 | |
| hsa-miR-765 | 2.33 | 0.0251 | 0.6526 | |
| hsa-miR-371a-5p | 2.13 | 0.0493 | 0.7660 | |
| hsa-miR-620 | 2.08 | 0.0213 | 0.6526 | |
| hsa-miR-936 | 2.03 | 0.0018 | 0.6526 | |
| Down-regulated | hsa-miR-22-3p | 0.26 | 0.0157 | 0.6526 |
| hsa-miR-1293 | 0.27 | 0.0170 | 0.6526 | |
| hsa-miR-548at-5p | 0.29 | 0.0017 | 0.6526 | |
| hsa-miR-5196-3p | 0.30 | 0.0067 | 0.6526 | |
| hsa-miR-4286 | 0.34 | 0.0266 | 0.6526 | |
| hsa-miR-139-3p | 0.34 | 0.0136 | 0.6526 | |
| hsa-miR-4313 | 0.34 | 0.0249 | 0.6526 | |
| hsa-miR-1247-5p | 0.35 | 0.0272 | 0.6548 | |
| hsa-miR-103a-3p | 0.36 | 0.0195 | 0.6526 | |
| ebv-miR-BHRF1-2-3p | 0.40 | 0.0127 | 0.6526 | |
| hsa-miR-107 | 0.40 | 0.0052 | 0.6526 | |
| hsa-miR-4665-3p | 0.41 | 0.0175 | 0.6526 | |
| hsa-miR-4800-3p | 0.41 | 0.0136 | 0.6526 | |
| hsa-miR-1260b | 0.42 | 0.0211 | 0.6526 | |
| hsa-miR-96-5p | 0.43 | 0.0299 | 0.6729 | |
| hsa-let-7a-2-3p | 0.50 | 0.0447 | 0.7509 |
DEMs identified from Cancer (C) vs. Normal control (A) comparison
| ID | Fold change |
| FDR | |
|---|---|---|---|---|
| Up-regulated | hsa-miR-4463 | 6.57 | 0.0050 | 0.2162 |
| hsa-miR-4646-5p | 6.42 | 0.0362 | 0.2704 | |
| hsa-miR-1273a | 6.16 | 0.0178 | 0.2424 | |
| hsa-miR-1285-5p | 3.87 | 0.0269 | 0.2620 | |
| hsa-miR-3621 | 3.78 | 0.0044 | 0.2162 | |
| hsa-miR-4434 | 3.58 | 0.0178 | 0.2424 | |
| hsa-miR-4706 | 3.46 | 0.0310 | 0.2692 | |
| hsa-miR-4533 | 3.06 | 0.0327 | 0.2704 | |
| hsa-miR-4800-5p | 3.01 | 0.0117 | 0.2424 | |
| hsa-miR-4644 | 2.88 | 0.0434 | 0.2899 | |
| hsa-miR-1255a | 2.84 | 0.0166 | 0.2424 | |
| hsa-miR-3611 | 2.52 | 0.0185 | 0.2424 | |
| hsa-miR-5704 | 2.51 | 0.0167 | 0.2424 | |
| hsa-miR-3173-3p | 2.48 | 0.0177 | 0.2424 | |
| hsa-miR-4441 | 2.32 | 0.0054 | 0.2184 | |
| hsa-miR-4436b-3p | 2.27 | 0.0225 | 0.2547 | |
| hsa-miR-4784 | 2.23 | 0.0144 | 0.2424 | |
| hsa-miR-10a-3p | 2.13 | 0.0002 | 0.2162 | |
| hsa-miR-4476 | 2.08 | 0.0256 | 0.2620 | |
| Down-regulated | hsa-miR-574-3p | 0.08 | 0.0064 | 0.2325 |
| hsa-miR-148b-3p | 0.09 | 0.0093 | 0.2334 | |
| hsa-miR-450b-5p | 0.10 | 0.0062 | 0.2325 | |
| hsa-miR-139-3p | 0.14 | 0.0088 | 0.2334 | |
| hsa-miR-323b-5p | 0.15 | 0.0088 | 0.2334 | |
| hsa-miR-942-5p | 0.16 | 0.0070 | 0.2325 | |
| hsa-miR-301a-5p | 0.17 | 0.0014 | 0.2162 | |
| hsa-miR-450a-5p | 0.18 | 0.0269 | 0.2620 | |
| hsa-miR-124-3p | 0.19 | 0.0396 | 0.2866 | |
| hsa-miR-581 | 0.21 | 0.0211 | 0.2537 | |
| hsa-miR-1294 | 0.21 | 0.0435 | 0.2899 | |
| hsa-miR-3938 | 0.24 | 0.0022 | 0.2162 | |
| hsa-miR-377-5p | 0.24 | 0.0168 | 0.2424 | |
| hsa-miR-302c-3p | 0.26 | 0.0381 | 0.2819 | |
| hsa-let-7f-1-3p | 0.26 | 0.0437 | 0.2899 | |
| hsa-miR-4642 | 0.27 | 0.0345 | 0.2704 | |
| hsa-miR-1247-5p | 0.27 | 0.0152 | 0.2424 | |
| hsa-miR-4725-3p | 0.27 | 0.0119 | 0.2424 | |
| hsa-miR-142-3p | 0.28 | 0.0181 | 0.2424 | |
| hsa-miR-3150b-3p | 0.29 | 0.0332 | 0.2704 | |
| hsa-miR-487a-5p | 0.29 | 0.0271 | 0.2620 | |
| hsa-miR-1293 | 0.31 | 0.0263 | 0.2620 | |
| hsa-miR-4731-3p | 0.32 | 0.0053 | 0.2184 | |
| hsa-miR-532-3p | 0.32 | 0.0007 | 0.2162 | |
| hsa-miR-140-5p | 0.32 | 0.0178 | 0.2424 | |
| hsa-miR-4323 | 0.33 | 0.0341 | 0.2704 | |
| hsa-miR-365a-3p/hsa-miR-365b-3p | 0.33 | 0.0269 | 0.2620 | |
| hsa-miR-625-3p | 0.34 | 0.0064 | 0.2325 | |
| hsa-miR-1228-3p | 0.35 | 0.0251 | 0.2620 | |
| hsa-miR-548at-5p | 0.36 | 0.0153 | 0.2424 | |
| hsa-miR-125a-5p | 0.38 | 0.0464 | 0.2965 | |
| hsa-miR-574-5p | 0.38 | 0.0307 | 0.2692 | |
| hsa-miR-3614-3p | 0.39 | 0.0358 | 0.2704 | |
| hsa-miR-569 | 0.39 | 0.0067 | 0.2325 | |
| hsa-miR-876-3p | 0.40 | 0.0443 | 0.2907 | |
| hsa-miR-1238-3p | 0.40 | 0.0467 | 0.2965 | |
| hsa-miR-1538 | 0.40 | 0.0131 | 0.2424 | |
| hsa-miR-1299 | 0.40 | 0.0083 | 0.2334 | |
| hsa-miR-107 | 0.40 | 0.0476 | 0.2965 | |
| hsa-miR-1281 | 0.40 | 0.0472 | 0.2965 | |
| hsa-miR-3184-3p | 0.41 | 0.0268 | 0.2620 | |
| hsa-miR-296-5p | 0.42 | 0.0204 | 0.2537 | |
| hsa-miR-590-3p | 0.43 | 0.0338 | 0.2704 | |
| hsa-miR-638 | 0.43 | 0.0129 | 0.2424 | |
| hsa-miR-1233-3p | 0.43 | 0.0031 | 0.2162 | |
| hsa-miR-124-5p | 0.43 | 0.0168 | 0.2424 | |
| hsa-miR-1321 | 0.46 | 0.0155 | 0.2424 | |
| hsa-miR-1227-3p | 0.47 | 0.0187 | 0.2424 | |
| hsa-miR-5010-3p | 0.47 | 0.0299 | 0.2692 | |
| hsa-miR-508-3p | 0.48 | 0.0400 | 0.2870 | |
| hsa-miR-371b-3p | 0.48 | 0.0125 | 0.2424 | |
| hsa-miR-4750-5p | 0.49 | 0.0275 | 0.2625 | |
| hsa-miR-4285 | 0.49 | 0.0152 | 0.2424 |
DEMs identified from Cancer (C) vs. Adenomas (B) comparison
| ID | Fold change |
| FDR | |
|---|---|---|---|---|
| Up-regulated | hsa-miR-5581-3p | 3.84 | 0.0374 | 0.8256 |
| hsa-miR-5704 | 3.82 | 0.0208 | 0.8256 | |
| hsa-miR-4463 | 2.24 | 0.0250 | 0.8256 | |
| hsa-miR-3195 | 2.14 | 0.0401 | 0.8256 | |
| Down-regulated | hsa-miR-3655 | 0.25 | 0.0497 | 0.8256 |
| hsa-miR-198 | 0.29 | 0.0101 | 0.8256 | |
| hsa-miR-4506 | 0.29 | 0.0297 | 0.8256 | |
| hsa-miR-130b-3p | 0.29 | 0.0108 | 0.8256 | |
| hsa-miR-4483 | 0.30 | 0.0047 | 0.8256 | |
| hsa-miR-1205 | 0.34 | 0.0480 | 0.8256 | |
| hsa-miR-431-5p | 0.35 | 0.0426 | 0.8256 | |
| hsa-miR-548 k | 0.35 | 0.0216 | 0.8256 | |
| hsa-miR-99b-3p | 0.38 | 0.0326 | 0.8256 | |
| hsa-miR-4652-3p | 0.39 | 0.0343 | 0.8256 | |
| hsa-miR-30b-3p | 0.42 | 0.0396 | 0.8256 | |
| hsa-miR-371b-3p | 0.47 | 0.0303 | 0.8256 | |
| hsa-miR-135a-3p | 0.50 | 0.0436 | 0.8256 |
Fig. 2Venn diagrams showing the overlap of DEMs identified from each of the three comparisons: Cancer vs. Normal, Adenomas vs. Normal, and Cancer versus Adenoma, respectively. a The overlap of up-regulated DEMs; b the overlap of down-regulated DEMs
Fig. 3MicroRNA validation by qRT-PCR analysis. Serum levels of miR-4463, miR-5704, miR-371b-3p, miR-1247-5p, miR-1293, miR-548at-5p, miR-107, and miR-139-3p in healthy normal subjects (Normal, n = 20), patients with with colon adenoma (Adenomas, n = 20), patients with colon cancer (Cancer, n = 20). Expression levels of the miRNAs are normalized to cel-miR-39. Statistically significant differences were determined using one-way-ANOVA test. *P < 0.05, ***P < 0.001