| Literature DB >> 28427337 |
Victor A Alegana1,2, Jim Wright3, Carla Pezzulo3,4, Andrew J Tatem3,4, Peter M Atkinson3,5,6.
Abstract
BACKGROUND: Seeking treatment in formal healthcare for uncomplicated infections is vital to combating disease in low- and middle-income countries (LMICs). Healthcare treatment-seeking behaviour varies within and between communities and is modified by socio-economic, demographic, and physical factors. As a result, it remains a challenge to quantify healthcare treatment-seeking behaviour using a metric that is comparable across communities. Here, we present an application for transforming individual categorical responses (actions related to fever) to a continuous probabilistic estimate of fever treatment for one country in Sub-Saharan Africa (SSA).Entities:
Keywords: Bayesian hierarchical model; Item response theory; Markov Chain Monte Carlo; Treatment-seeking behaviour
Mesh:
Year: 2017 PMID: 28427337 PMCID: PMC5397699 DOI: 10.1186/s12874-017-0346-0
Source DB: PubMed Journal: BMC Med Res Methodol ISSN: 1471-2288 Impact factor: 4.615
Fig. 1Visualisation of malaria-associated fever treatment from DHS data by a age (Children 0–5 years) and b by travel time to the nearest health facility generated from GIS methods combining spatial data (Land cover, roads), population centres and the locations of health facilities
Fig. 2Graphical representation of the form of the models used. a simplified fixed parameter specification used for model 1 and model 2; b allowing for a random slope (model 3) on the αparameter; c random slope and intercept (model 4) for the α and β parameters, respectively, centering on residence (urban and rural) with correlation estimated via the Wishart prior specification. Model 1 and Model 2 differ only in the prior specification for item difficulty (b) parameter
Model comparison based on goodness-of-fit statistics
| Model | DIC | PD | Inverse log likelihood | Number of chains |
|---|---|---|---|---|
| M1a | 3615.9 | 2178.9 | −0.001 | 3 |
| M2a | 3685.1 | 2256.1 | −0.001 | 3 |
| M3 | 5098.7 | 3693.1 | −0.001 | 3 |
| M4 | 23874.1 | 22754.0 | −0.002 | 3 |
DIC is the deviance information criterion while PD is the model complexity (number of model parameters)
aModel 1 and model 2 only differ in prior specification for the b parameter
Estimated summary statistics and the 95% Bayesian credible intervals of parameters based on all four models
| Model | Estimate | a | b | c | α | β | Corr (α, β) |
|---|---|---|---|---|---|---|---|
| M1 | Mean | 0.704 | 0.807 | 0.340 | −0.084 | −0.098 | - |
| Median | 0.556 | 0.850 | 0.326 | −0.087 | −0.112 | - | |
| 95% CI | [0.016–2.194] | [-1.044–2.346] | [0.1554–0.597] | [-0.682–0.523] | [-0.439–0.394] | - | |
| Gelman-Rubin Convergence estimate | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | - | |
| Gelman-Rubin Convergence upper CI | 1.000 | 1.010 | 1.000 | 1.000 | 1.030 | - | |
| M2 | mean | 0.784 | 1.060 | 0.352 | −0.080 | −0.123 | - |
| median | 0.654 | 0.978 | 0.344 | −0.081 | −0.121 | - | |
| 95% CI | [0.042–2.243] | [0.100–2.452] | [0.172–0.572] | [-0.661–0.518] | [-0.417–0.218] | - | |
| Gelman-Rubin Convergence estimate | 1.001 | 1.000 | 1.001 | 1.001 | 1.020 | - | |
| Gelman-Rubin Convergence upper CI | 1.010 | 1.000 | 1.000 | 1.000 | 1.040 | - | |
| M3 | mean | 0.789 | 0.977 | 0.376 | −0.582 | −0.140 | - |
| median | 0.660 | 0.895 | 0.372 | −0.581 | −0.150 | - | |
| 95% CI | [0.046–2.225] | [0.055–2.423] | [0.176–0.597] | [-2.208–1.069] | [-0.434–0.248] | - | |
| Gelman-Rubin Convergence estimate | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | - | |
| Gelman-Rubin Convergence upper CI | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | - | |
| M4 | mean | 0.870 | 1.003 | 0.313 | −0.133 | −0.008 | −0.011 |
| median | 0.768 | 0.912 | 0.311 | −0.152 | −0.012 | 0.006 | |
| 95% CI | [0.059–2.244] | [0.063–2.477] | [0.095–0.527] | [-0.665–0.501] | [-0.880–0.873] | [-0.957–0.952] | |
| Gelman-Rubin Convergence estimate | 1.000 | 1.000 | 1.000 | 1.010 | 1.000 | 1.010 | |
| Gelman-Rubin Convergence upper CI | 1.000 | 1.000 | 1.010 | 1.040 | 1.000 | 1.050 |
M1 and M2 use a fixed parameter specification for α and β using normal priors but different priors for item parameters, M3 allows random intercepts only, and M4 is both a random slope and intercepts model. Only M4 include a measure of correlation between the multi-level regression parameters
Fig. 3Panel plots showing. a Fever response decay curves from the four model parameter values from the DHS survey in Namibia for 2014. The data are from 1138 (n = 891 training, 247validation) children under the age of five reporting fever 2 weeks prior to survey of which 726 sought treatment in the formal sector. b A scatterplot for mean estimates on α(intercept) and β (slope) parameters based on model 4 (random slope and intercept model at individual level). c Posterior density for IRT parameters (aindividual discriminant parameter, b item dificulty, and c probability threshold). d Receiver operating characteristic (ROC) plot based on the validation dataset (n = 247 children). The binary classification was based on the predicted probability of seeking treatment for fever (from model 1) with a cut-off at 0.65. ROC had AUC = 0.978 and an accuracy measure of 0.887
Estimated probability for fever treatment (mean and 95% Bayesian Credible Interval) at the nearest health facility
| Region | Population estimate 2015a | Estimated mean malaria incidence per 1000 population in 2014b | Estimated Average travel time to nearest health facility (minutes) | Probability of using a dispensary or clinic for fever treatment mean (95% CI) | Probability of using a health centre for fever treatment mean (95% CI) | Probability of using a Regional or district hospital for fever treatment mean (95% CI) |
|---|---|---|---|---|---|---|
| Zambezi | 105,804 | 1.612 | 23.0 | 0.546 (0.369–0.671) | 0.537 (0.369–0.667) | 0.531 (0.369–0.661) |
| Kavango | 259,984 | 1.467 | 29.7 | 0.513 (0.368–0.649) | 0.498 (0.368–0.633) | 0.503 (0.368–0.638) |
| Ohangwena | 283,188 | 1.426 | 29.3 | 0.522 (0.368–0.650) | 0.494 (0.367–0.630) | 0.497 (0.368–0.632) |
| Oshikoto | 210,881 | 1.256 | 37.3 | 0.504 (0.368–0.644) | 0.492 (0.367–0.633) | 0.496 (0.367–0.637) |
| Otjozondjupa | 167,186 | 1.227 | 31.8 | 0.504 (0.368–0.643) | 0.486 (0.367–0.623) | 0.499 (0.368–0.637) |
| Omusati | 281,050 | 1.131 | 35.6 | 0.513 (0.368–0.650) | 0.497 (0.367–0.637) | 0.498 (0.367–0.638) |
| Omaheke | 82,441 | 1.126 | 38.3 | 0.490 (0.367–0.631) | 0.496 (0.367–0.637) | 0.493 (0.367–0.634) |
| Oshana | 207,218 | 1.096 | 17.6 | 0.561 (0.369–0.677) | 0.545 (0.369–0.661) | 0.547 (0.369–0.663) |
| Kunene | 102,986 | 0.967 | 146.4 | 0.433 (0.364–0.614) | 0.426 (0.364–0.608) | 0.429 (0.364–0.612) |
| Khomasc | 418,742 | - | 43.9 | 0.487 (0.367–0.636) | 0.483 (0.367–0.631) | 0.482 (0.367–0.631) |
| Karasc | 88,977 | - | 110.2 | 0.447 (0.365–0.619) | 0.440 (0.365–0.613) | 0.446 (0.365–0.618) |
| Hardapc | 93,447 | - | 86.7 | 0.471 (0.366–0.628) | 0.470 (0.366–0.626) | 0.461 (0.366–0.616) |
| Erongoc | 180,672 | - | 98.4 | 0.443 (0.365–0.620) | 0.440 (0.365–0.618) | 0.440 (0.365–0.617) |
Data for health facilities represent public and private entities based on facility census 2009 [85] updated based on HMIS reports. Probability of use for fever treatment estimated from parameters of model 1
aPopulation estimates derived from worldpop [20]
bMean malaria incidence derived from Alegana et al. [86]
cRegions designated as no malaria risk with case incidence of less than 1 per 10,000 population