Literature DB >> 28426169

Microsecond Dynamics in Ubiquitin Probed by Solid-State 15 N NMR Spectroscopy R Relaxation Experiments under Fast MAS (60-110 kHz).

Nils-Alexander Lakomek1, Susanne Penzel1, Alons Lends1, Riccardo Cadalbert1, Matthias Ernst1, Beat H Meier1.   

Abstract

15 N R1ρ relaxation experiments in solid-state NMR spectroscopy are sensitive to timescales and amplitudes of internal protein motions in the hundreds of nano- to microsecond time window, which is difficult to probe by solution-state NMR spectroscopy. By using 15 N R1ρ relaxation experiments, a simplified approach to detect low microsecond protein dynamics is described and residue-specific correlation times are determined from the ratio of 15 N R1ρ rate constants at different magic angle spinning frequencies. Microcrystalline ubiquitin exhibits small-amplitude dynamics on a timescale of about 1 μs across the entire protein, and larger amplitude motions, also on the 1 μs timescale, for several sites, including the β1 -β2 turn and the N terminus of the α helix. According to the analysis, the microsecond protein backbone dynamics are of lower amplitude than that concluded in previous solid-state NMR spectroscopy studies, but persist across the entire protein with a rather uniform timescale of 1 μs.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; biophysics; molecular dynamics; proteins; solid-state structures

Year:  2017        PMID: 28426169     DOI: 10.1002/chem.201701738

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  14 in total

1.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

2.  Solid-state NMR reveals a comprehensive view of the dynamics of the flexible, disordered N-terminal domain of amyloid-β fibrils.

Authors:  Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu; Liliya Vugmeyster
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

3.  Deuteron Solid-State NMR Relaxation Measurements Reveal Two Distinct Conformational Exchange Processes in the Disordered N-Terminal Domain of Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu
Journal:  Chemphyschem       Date:  2019-06-14       Impact factor: 3.102

4.  Deuteron rotating frame relaxation for the detection of slow motions in rotating solids.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Alexander Greenwood; Riqiang Fu
Journal:  J Magn Reson       Date:  2022-02-19       Impact factor: 2.229

5.  Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR.

Authors:  Matthew D Shannon; Theint Theint; Dwaipayan Mukhopadhyay; Krystyna Surewicz; Witold K Surewicz; Dominique Marion; Paul Schanda; Christopher P Jaroniec
Journal:  Chemphyschem       Date:  2018-11-07       Impact factor: 3.102

6.  Refocusing CSA during magic angle spinning rotating-frame relaxation experiments.

Authors:  Eric G Keeler; Keith J Fritzsching; Ann E McDermott
Journal:  J Magn Reson       Date:  2018-09-14       Impact factor: 2.229

Review 7.  Recent developments in deuterium solid-state NMR for the detection of slow motions in proteins.

Authors:  Liliya Vugmeyster
Journal:  Solid State Nucl Magn Reson       Date:  2021-01-07       Impact factor: 2.293

8.  Slow conformational exchange and overall rocking motion in ubiquitin protein crystals.

Authors:  Vilius Kurauskas; Sergei A Izmailov; Olga N Rogacheva; Audrey Hessel; Isabel Ayala; Joyce Woodhouse; Anastasya Shilova; Yi Xue; Tairan Yuwen; Nicolas Coquelle; Jacques-Philippe Colletier; Nikolai R Skrynnikov; Paul Schanda
Journal:  Nat Commun       Date:  2017-07-27       Impact factor: 14.919

9.  Microsecond motions probed by near-rotary-resonance R15N MAS NMR experiments: the model case of protein overall-rocking in crystals.

Authors:  Alexey Krushelnitsky; Diego Gauto; Diana C Rodriguez Camargo; Paul Schanda; Kay Saalwächter
Journal:  J Biomol NMR       Date:  2018-05-30       Impact factor: 2.835

10.  100 kHz MAS Proton-Detected NMR Spectroscopy of Hepatitis B Virus Capsids.

Authors:  Lauriane Lecoq; Maarten Schledorn; Shishan Wang; Susanne Smith-Penzel; Alexander A Malär; Morgane Callon; Michael Nassal; Beat H Meier; Anja Böckmann
Journal:  Front Mol Biosci       Date:  2019-07-24
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