| Literature DB >> 28426169 |
Nils-Alexander Lakomek1, Susanne Penzel1, Alons Lends1, Riccardo Cadalbert1, Matthias Ernst1, Beat H Meier1.
Abstract
15 N R1ρ relaxation experiments in solid-state NMR spectroscopy are sensitive to timescales and amplitudes of internal protein motions in the hundreds of nano- to microsecond time window, which is difficult to probe by solution-state NMR spectroscopy. By using 15 N R1ρ relaxation experiments, a simplified approach to detect low microsecond protein dynamics is described and residue-specific correlation times are determined from the ratio of 15 N R1ρ rate constants at different magic angle spinning frequencies. Microcrystalline ubiquitin exhibits small-amplitude dynamics on a timescale of about 1 μs across the entire protein, and larger amplitude motions, also on the 1 μs timescale, for several sites, including the β1 -β2 turn and the N terminus of the α helix. According to the analysis, the microsecond protein backbone dynamics are of lower amplitude than that concluded in previous solid-state NMR spectroscopy studies, but persist across the entire protein with a rather uniform timescale of 1 μs.Entities:
Keywords: NMR spectroscopy; biophysics; molecular dynamics; proteins; solid-state structures
Year: 2017 PMID: 28426169 DOI: 10.1002/chem.201701738
Source DB: PubMed Journal: Chemistry ISSN: 0947-6539 Impact factor: 5.236