| Literature DB >> 28423488 |
Feimeng An1,2, Jieli Du2, Yuju Cao3, Jianping Shi4, Yongchang Guo3, Tianbo Jin5, Jian Li3, Junyu Chen1,2, Ping Li2, Mei Dong2, Guoqiang Wang2, Jianzhong Wang2.
Abstract
Osteonecrosis of the femoral head (ONFH) is an orthopedic refractory disease that adversely affects quality of life. Matrix metalloproteinase-8 (MMP-8) produced by the bone marrow has been implicated in the degradation of collagen during bone development. We assessed whether MMP8 polymorphisms are associated with ONFH. In a case-control study, using χ2 tests and genetic model analyses, we genotyped 5 MMP8 single-nucleotide polymorphisms (SNPs) in 585 ONFH patients and 507 healthy control subjects in a Chinese Han population. The MMP8 rs11225394 SNP was associated with an increased risk of ONFH in an allele model (OR=1.34; 95% CI, 1.003-1.786, P=0.047). In addition, rs11225394 was associated with an increased risk of ONFH in a dominant model (OR =1.39, 95% CI, 1.02-1.89, P=0.036), over-dominant model (OR=1.39, 95% CI, 1.02-1.89, P=0.038), and log-additive model (OR =1.36, 95% CI, 1.01-1.84, P=0.039). After adjusting for age and gender, rs11225394 was associated with ONFH in a dominant (OR =1.44, 95% CI, 1.05-1.96, P=0.023), over-dominant (OR =1.44, 95% CI, 1.05-1.98, P=0.022), and log-additive model (OR =1.40, 95% CI, 1.04-1.90, P=0.027). These results provide the first evidence that MMP8 SNP at the rs11225394 locus is associated with the increased risk of ONFH in Chinese Han population.Entities:
Keywords: MMP8; association study; osteonecrosis of the femoral head; single nucleotide polymorphisms
Mesh:
Substances:
Year: 2017 PMID: 28423488 PMCID: PMC5400606 DOI: 10.18632/oncotarget.15371
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Primers Used for this Study
| SNP_ID | 1st-PCRP | 2nd-PCRP | UEP_SEQ |
|---|---|---|---|
| rs3740938 | ACGTTGGATGGTCAGTAAGAGGAATCAAAG | ACGTTGGATGTGACATTTGATGCTATCAC | GATGCTATCACCACACT |
| rs2012390 | ACGTTGGATGACTGTTTCTAGGTCACACCC | ACGTTGGATGTCAGGGAGAGGAAGCAATTC | GAAGCAAATGTGAGGAAGAT |
| rs1940475 | ACGTTGGATGTTTGGGTTGAATGTGACGGG | ACGTTGGATGTAAAACCACCACTGTCAGGC | CTCCACAGCGAGGCTTTT |
| rs11225394 | ACGTTGGATGCAATCTCAAACTAATCACCC | ACGTTGGATGTTAGGAAATAGTGTGGGTTG | AGTGTGGGTTGTTTTCTCTT |
| rs11225395 | ACGTTGGATGAGAGCTGCTGCTCCACTATG | ACGTTGGATGGTTTAGAGAGACTGAGCTGG | GCTGAGCTGGGAGCTACTATA |
Characteristics of cases and controls in this study
| Various | casesn=585 | Controlsn=507 | P value |
|---|---|---|---|
| Sex | 0.293 | ||
| male | 472(80,7%) | 396(78.1%) | |
| female | 113(19.3%) | 111(21.9%) | |
| Age, year (mean ± SD) | 42.61±12.951 | 47.43±9.739 | < 0.001 |
p ≤ 0.05 indicates statistical significance
Two-sided Chi-squared test
Independent samples t test
Allele frequencies in cases and controls and odds ratio estimates for ONFH
| SNP | Gene | Locus | Alleles (A /B) | MAF | HWE | ORs | 95%CI | ||
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||
| rs3740938 | MMP8 | 11q22.2 | A/G | 0.243 | 0.235 | 0.621 | 1.04 | 0.856-1.270 | 0.680 |
| rs2012390 | MMP8 | 11q22.2 | G/A | 0.276 | 0.276 | 0.912 | 1.00 | 0.827-1.204 | 0.981 |
| rs1940475 | MMP8 | 11q22.2 | T/C | 0.387 | 0.369 | 0.775 | 1.08 | 0.909-1.286 | 0.378 |
| rs11225394 | MMP8 | 11q22.2 | T/C | 0.112 | 0.086 | 0.563 | 1.34 | 1.003-1.786 | 0.047 |
| rs11225395 | MMP8 | 11q22.2 | A/G | 0.379 | 0.360 | 0.773 | 1.08 | 0.910-1.290 | 0.367 |
SNP single nucleotide polymorphism, HWE Hardy-Weinberg equilibrium, OR odds ratio, 95% CI 95% confidence interval, MAF minor allele frequency
p ≤ 0.05 indicates statistical significance
p was calculated by exact test
p was calculated by Pearson Chi-squared test
Genotypic model analysis of relationship between SNPs and ONFH risk
| Model | Genotype | Group=control | Group=Hormone | Without Adjustment | With Adjustment | AIC | BIC | ||
|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | ||||||||
| Codominant | C/C | 405 (83.2%) | 456 (78.1%) | 1 | 1 | ||||
| T/C | 80 (16.4%) | 125 (21.4%) | 0.11 | 0.073 | 1437.9 | 1462.8 | |||
| T/T | 2 (0.4%) | 3 (0.5%) | 1.33 (0.22-8.01) | 1.14 (0.18-7.08) | |||||
| Dominant | C/C | 405 (83.2%) | 456 (78.1%) | 1 | 0.036 | 1 | 0.023 | 1435.9 | 1455.9 |
| T/C-T/T | 82 (16.8%) | 128 (21.9%) | |||||||
| Recessive | C/C-T/C | 485 (99.6%) | 581 (99.5%) | 1 | 0.8 | 1 | 0.95 | 1441.1 | 1461 |
| T/T | 2 (0.4%) | 3 (0.5%) | 1.25 (0.21-7.52) | 1.07 (0.17-6.61) | |||||
| Overdominant | C/C-T/T | 407 (83.6%) | 459 (78.6%) | 1 | 0.038 | 1 | 0.022 | 1435.9 | 1455.8 |
| T/C | 80 (16.4%) | 125 (21.4%) | |||||||
| Log-additive | --- | --- | --- | 0.039 | 0.027 | 1436.3 | 1456.2 | ||
p ≤ 0.05 indicates statistical significance
p values were calculated by Wald test by unconditional logistic regression adjusted for age and gender