| Literature DB >> 28420383 |
Yaowapa Maneerat1, Kriengchai Prasongsukarn2, Surachet Benjathummarak3, Wilanee Dechkhajorn4.
Abstract
BACKGROUND: Coronary heart disease (CHD) is an important complication of atherosclerosis. Biomarkers, which associate with CHD development, are potential to predict CHD risk. To determine whether genes showing altered expression in hyperlipidaemia (H) and coronary heart disease (CHD) patients compared with controls could be CHD risk biomarkers.Entities:
Keywords: Biomarker; Coronary heart disease; Hyperlipidaemia; Inflammation; PPBP; α-defensin
Mesh:
Substances:
Year: 2017 PMID: 28420383 PMCID: PMC5395883 DOI: 10.1186/s12944-017-0471-0
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Fig. 1Experimental design and study population
Fig. 2Gene expression profiling by DNA microarray. Total RNA was extracted from 2 × 106 peripheral blood mononuclear cells (PBMCs) (n = 7). Differentially expressed genes > 2.0-fold change were further evaluated. (a) Heat maps of differentially expressed transcripts in PBMCs from hyperlipidaemia patients vs. control, and coronary heart disease (CHD) patients post-coronary bypass grafting vs. control. (b) Venn diagram illustrating the eight genes up-regulated in the two patient groups. (c) List of the eight genes common to both patient groups and their functions [7, 34, 35, 48–54]
Primers for gene amplification in Real-Time qRT-PCR
| Gene | Accession no. | Primer sequence (5′-3′) | Length | Length (bp) | REF |
|---|---|---|---|---|---|
|
| NM_001101.3 | F: TCACCCACACTGTGCCCATCTACGA | 25 | 295 | [ |
| R: CAGCGGAACCGCTCATTGCCAATGG | 25 | ||||
|
| NM_002704.3 | F: TTGTAGGCAGCAACTCACCC | 20 | 135 | [ |
| R: TGCAAGGCATGAAGTGGTCT | 20 | ||||
|
| NM_005217.3 | F: TCCTTGCTGCCATTCTCCTG | 20 | 204 | [ |
| R: TGCACGCTGGTATTCTGCAA | 20 | ||||
|
| NM_000517.4 | F: TCAAGCTCCTAAGCCACTGC | 20 | 162 | [ |
| R: CAGGAGGAACGGCTACCGAG | 20 | ||||
|
| NM_000518.4 | F: GCAACCTCAAACAGACACCA | 20 | 182 | [ |
| R: CAGCATCAGGAGTGGACAGA | 20 | ||||
|
| NM_000576.2 | F: CCAGCTACGAATCTCCGACC | 20 | 180 | [ |
| R: CTGCCTGCTCTTGGCTAACT | 20 | ||||
|
| NM_002983.2 | F: CTGCAACCAGTTCTCTGCATC | 21 | 145 | [ |
| R: TAGGAAGATGACACCGGGCT | 20 | ||||
|
| NM_002984.3 | F: CCGCCTGCTGCTTTTCTTAC | 20 | 141 | [ |
| R: CACTGGGATCAGCACAGACT | 20 | ||||
|
| NM_001024466.1 | F: TGGAAGCCATCAAACGTGACT | 21 | 173 | [ |
| R: GCCTGTTGTTCCTTGCAGTG | 20 |
General description and clinical manifestations of the study population
| Variable | Age (year) | TC (mg/dL) | LDL (mg/dL) | TG (mg/dL) | HDL (mg/dL) |
|---|---|---|---|---|---|
| Normal | 42 (23–58) | 175 (156–199) | 99 (60–111) | 147 (70–162) | 41 (31–56) |
| Hyperlipidaemia | 42 (26–58) | 223 (150–304)b | 131 (63–190)c | 166 (103–1181)d | 46 (26–80) |
| Coronary Heart Disease | 66 (58–78)a | 166 (115–259) | 89 (44–174) | 92 (72–169) | 49 (37–75) |
All patients and controls were male. N normal controls, H and CHD patients with hyperlipidaemia and coronary heart disease, respectively, TC total cholesterol, TG triglyceride, HDL high-density lipoprotein, LDL low-density lipoprotein
Data are shown as medians (ranges). The differences in each variable between two groups (N vs. H, H vs. CHD, and N vs. CHD) were determined using the Mann–Whitney U test. The α level was set at <0.05 at a 95% confidence interval. The significantly different variables between groups are as follows
a Age of the patients with CHD was significantly more than N and H groups (p = 0.000)
b Levels of TC in H were significantly higher than those in N (p = 0.004) and CHD groups (p = 0.008)
c LDL levels in H was tended to higher than in N groups (p = 0.072), and significantly higher than in CHD group (p = 0.049)
d There was significant difference in TG levels; H > CHD (p = 0.013); N > CHD (p = 0.025)
Significant correlations between mRNA expression of gene profile
| Gene |
|
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|---|
|
| 0.3633 | 0.4961 | 0.4261 | 0.3533 | 0.3780 | |||
|
| 0.3633 | |||||||
|
| 0.4961 | 0.8487 | 0.4138 | 0.4203 | 0.5560 | |||
|
| 0.4261 | 0.8487 | 0.3626 | 0.3595 | 0.4747 | |||
|
| 0.6199 | 0.7173 | 0.5514 | |||||
|
| 0.4138 | 0.3626 | 0.6199 | 0.6269 | 0.5587 | |||
|
| 0.3533 | 0.4203 | 0.3595 | 0.7173 | 0.6269 | 0.8701 | ||
|
| 0.3780 | 0.5560 | 0.4747 | 0.5514 | 0.5587 | 0.8701 |
The mRNA expressions of gene profile were non-parametric data (mean of fold change). Correlations (rs) between the expressions were analyzed by the Rho-Spearman correlation analysis. The level was set at <0.05 at a 95% confidence interval. Only significant correlations were shown
Correlations between clinical data and plasma PPBP or α -defensin 1–3
| Variables | Age | TC | LDL | TG | HDL |
|---|---|---|---|---|---|
| PPBP | 0.604 | 0.577 | 0.543 | 0.081 | - 0.149 |
| α - de α-defensin | 0.602 | 0.530 | 0.525 | 0.088 | - 0.087 |
Plasma levels of PPBP, α-defensin 1–3, and clinical manifestations were non parametric data Correlations (rs) between variables were analyzed by the Rho-Spearman correlation analysis. The α level was set at <0.05 at a 95% confidence interval. * refers to a significant correlation (p < 0.05)
Fig. 3Expression of eight selected genes showing altered expression in patient groups vs. controls. (a) mRNA expression (2.0-fold change) relative to β-actin mRNA in PBMCs obtained from controls, and hyperlipidaemia and CHD patients post-bypass surgery, as determined by qRT-PCR. Data are presented as the mean 2.0-fold change relative to control ± SEM (n = 10). (b) Plasma levels (pg/ml) of PPBP and α-defensin 1–3 from healthy controls (n = 20), hyperlipidaemia patients (n = 24), and CHD patients post-bypass surgery (n = 21). Data are illustrated as whisker plots, with boxes denoting the interquartiles range (IQR) and whiskers the minimum/maximum values. (c) Correlations between relative expression of PPBP and DEFA1/DEFA3, and between plasma levels of PPBP and α-defensin 1–3. *refers to a significant difference (p > 0.05)
Fig. 4Possible roles and interplay of our potential predictive inflammatory markers; including PPBP, DEFA1/DEFA3, HBA2, and HBB in the network of atherogenesis and complications of coronary heart disease [55]