Literature DB >> 28417190

Larkinella harenae sp. nov., Isolated from Korean Beach Soil.

Su-Jin Park1, Jae-Jin Lee1, Seung-Yeol Lee1, Dae Sung Lee2, Myung Kyum Kim3, Leonid N Ten1, Hee-Young Jung4,5.   

Abstract

A Gram-negative, short rod-shaped, gliding motile, and pale pink-pigmented bacterial strain, designated 15J9-9T, was isolated from the soil of Iho Tewoo Beach, Jeju Island, Korea, and characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain 15J9-9T belonged to the family Cytophagaceae and was related to Larkinella bovis M2T2B15T (96.5% similarity), Larkinella arboricola Z0532T (95.3% similarity), and Larkinella insperata LMG 22510T (95.2% similarity). The DNA G+C content of strain 15J9-9T was 48 mol%. The detection of phosphatidylethanolamine, phosphatidylserine, two unknown aminophospholipids (APL1 and APL2), and two unknown polar lipids (L1 and L2) in polar lipid profile, menaquinone-7 as the predominant quinone, and a fatty acid profile of C16:1 ω5c, iso-C15:0, and iso-C17:0 3-OH as the major fatty acids supported the affiliation of strain 15J9-9T to the genus Larkinella. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J9-9T should be classified in the genus Larkinella as a representative of a novel species, for which the name Larkinella harenae sp. nov. is proposed. The type strain is 15J9-9T (=KCTC 42999T = JCM 31656T).

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Year:  2017        PMID: 28417190     DOI: 10.1007/s00284-017-1246-6

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  9 in total

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3.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
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Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
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