| Literature DB >> 28415985 |
Kessarin Thanapirom1,2, Sirinporn Suksawatamnuay1,2, Wattana Sukeepaisarnjaroen3, Pisit Tangkijvanich4, Sombat Treeprasertsuk1,2, Panarat Thaimai1,2, Rujipat Wasitthankasem5, Yong Poovorawan5, Piyawat Komolmit6,7.
Abstract
BACKGROUND: Patients with chronic hepatitis C (HCV) infection have high prevalence of vitamin D deficiency. Genome-wide association study data has showed that several genetic variants within vitamin D cascade affect vitamin D function. This study aimed to determine whether genetic polymorphisms of genes in the vitamin D pathway are associated with treatment responses to pegylated interferon (PEG-IFN)-based therapy in patients with chronic HCV infection.Entities:
Keywords: Chronic hepatitis C virus infection; Gene polymorphisms; Pegylated interferon; Vitamin D
Mesh:
Substances:
Year: 2017 PMID: 28415985 PMCID: PMC5392932 DOI: 10.1186/s12876-017-0613-x
Source DB: PubMed Journal: BMC Gastroenterol ISSN: 1471-230X Impact factor: 3.067
Clinical characteristics of patients with chronic hepatitis C virus infection
| Baseline characteristics | Non-SVR ( | SVR ( |
|
|---|---|---|---|
| Female | 85 (34.6%) | 128 (34.0%) | 0.88 |
| Age (years), | 51.9 ± 8.4 | 50.0 ± 10.1 | 0.01 |
| Body mass index (kg/m2) | 24.6 ± 3.4 | 24.5 ± 3.5 | 0.71 |
| Alcohol drinking | 138 (68.7%) | 155 (62.5%) | 0.17 |
| Diabetes mellitus | 51 (25.5%) | 55 (22.5%) | 0.47 |
| Genotype | |||
| 1 | 131 (53.3%) | 147 (39.0%) | <0.005 |
| 2 | 0 | 1 (0.3%) | |
| 3 | 101 (41.1%) | 186 (49.3%) | |
| 6 | 14 (5.7%) | 43 (11.4%) | |
| Pre-treatment HCV-RNA (IU/ml) | 6.02 ± 0.60 | 5.81 ± 0.88 | 0.003 |
| Pre-treatment ALT level (U/L) | 106.2 ± 158.3 | 102.5 ± 75.8 | 0.98 |
| Pre-treatment AST level (U/L) | 87.3 ± 130.2 | 73.4 ± 52.1 | 0.046 |
| Advanced fibrosis (stage 2–4) | 76 (51.0%) | 73 (36.0%) | 0.005 |
| PEG-IFN alfa-2a | 109 (55.6%) | 145 (58.2%) | 0.58 |
Data represent as n (%), mean ± SD. AST aspartate aminotransferase, ALT alanine aminotransferase, HCV RNA hepatitis C virus RNA, PEG-IFN pegylated interferon, SVR sustained virologic response, SD standard deviation
Genotypic frequencies of GC, CYP2R1, CYP27B1 and DHCR7 in Thai chronic hepatitis C patients
| All patients ( | Genotype 1 ( | Non-genotype 1 ( | |
|---|---|---|---|
|
| |||
| CC | 345 (60.1%) | 162 (62.5%) | 183 (58.1%) |
| CA | 196 (34.1%) | 78 (30.1%) | 118 (37.5%) |
| AA | 33 (5.7%) | 19 (7.3%) | 14 (4.4%) |
|
| |||
| GG | 64 (11.1%) | 28 (10.8%) | 36 (11.4%) |
| GT | 237 (41.3%) | 108 (41.7%) | 129 (41.0%) |
| TT | 273 (47.6%) | 123 (47.5%) | 150 (47.6%) |
|
| |||
| GG | 118 (20.1%) | 59 (22.1%) | 59 (18.5%) |
| GA | 293 (50.0%) | 138 (51.7%) | 155 (48.6%) |
| AA | 175 (29.9%) | 70 (26.2%) | 105 (32.9%) |
|
| |||
| AA | 236 (60.2%) | 132 (64.4%) | 104 (55.6%) |
| AC | 130 (33.2%) | 59 (28.8%) | 71 (38.0%) |
| CC | 26 (6.6%) | 14 (6.8%) | 12 (6.4%) |
|
| |||
| TT | 58 (10.2%) | 30 (11.6%) | 28 (9%) |
| TC | 242 (42.5%) | 106 (41.1%) | 136 (43.7%) |
| CC | 269 (47.3%) | 122 (47.3%) | 147 (47.3%) |
|
| |||
| CC | 253 (44.5%) | 123 (47.5%) | 130 (41.9%) |
| CT | 239 (42.0%) | 106 (40.9%) | 133 (42.9%) |
| TT | 77 (13.5%) | 30 (11.6%) | 47 (15.2%) |
|
| |||
| CC | 135 (23.2%) | 57 (21.5%) | 78 (24.7%) |
| CA | 294 (50.6%) | 139 (52.5%) | 155 (49.1%) |
| AA | 152 (26.2%) | 69 (26.0%) | 83 (26.3%) |
|
| |||
| GG | 272 (65.9%) | 145 (70.0%) | 127 (61.7%) |
| GT | 118 (28.6%) | 53 (25.6%) | 65 (31.6%) |
| TT | 23 (5.6%) | 9 (4.3%) | 14 (6.8%) |
Fig. 1Association of DHCR7 rs12785878 polymorphism with SVR in Thai patients with chronic HCV infection
Factors associated with sustained virological response to pegylated interferon and ribavirin in chronic hepatitis C virus genotype 1-infected patients
| Univariate analyses | Multivariate analyses | |||
|---|---|---|---|---|
| Odds ratio (95%CI) |
| Odds ratio (95%CI) |
| |
| Age < 50 years | 1.93 (1.10–3.38) | 0.02 | 1.76 (0.71–4.37) | 0.22 |
| Female | 1.26 (0.76–2.09) | 0.37 | ||
| BMI | 1.02 (0.95–1.10) | 0.51 | ||
| Alcohol drinking | 0.82 (0.46–1.46) | 0.50 | ||
| Diabetes Mellitus | 0.78 (0.42–1.45) | 0.44 | ||
| HCV RNA (log IU/ml) | 0.76 (0.55–1.07) | 0.11 | ||
| ALT | 0.99 (0.99–1.00) | 0.46 | ||
| AST | 0.99 (0.99–1.00) | 0.44 | ||
| Liver fibrosis stage 0–1 | 3.88 (1.83–8.20) | <0.001 | 5.00 (2.02–12.37) | <0.001 |
|
| 1.67 (0.92–3.02) | 0.09 | 1.24 (0.47–3.29) | 0.67 |
|
| 1.93 (1.05–1.96) | 0.032 | 2.69 (1.03–7.05) | 0.04 |
AST aspartate aminotransferase, ALT alanine aminotransferase, BMI body mass index, HCV RNA hepatitis C virus RNA, 95%CI 95% confidence interval
Performance of DHCR7 rs12785878 polymorphism, liver fibrosis, and rapid virologic response for predicting sustained virologic response in hepatitis C virus genotype 1-infected patients
| Sensitivity | Specificity | PPV | NPV | |
|---|---|---|---|---|
|
| 37% | 76.6% | 59.7% | 56.6% |
| Liver fibrosis stage 0–1 | 81% | 47.6% | 66% | 66.7% |
| RVR | 64.9% | 68.6% | 69.8% | 63.6% |
|
| 18.1% | 95.9% | 81% | 54.7% |
|
| 18.4% | 97.9% | 88.9% | 57.2% |
PPV positive predictive value, NPV negative predictive value, RVR rapid virologic response