Literature DB >> 28407448

Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp.

Xin Wang1, Yi Jin Liew1, Yong Li1, Didier Zoccola2, Sylvie Tambutte2, Manuel Aranda1.   

Abstract

Corallimorpharia are the closest noncalcifying relatives of reef-building corals. Aside from their popularity among aquarium hobbyists, their evolutionary position between the Actiniaria (sea anemones) and the Scleractinia (hard corals) makes them ideal candidates for comparative studies aiming at understanding the evolution of hexacorallian orders in general and reef-building corals in particular. Here we have sequenced and assembled two draft genomes for the Corallimorpharia species Amplexidiscus fenestrafer and Discosoma sp. The draft genomes encompass 370 and 445 Mbp, respectively, and encode for 21,372 and 23,199 genes. To facilitate future studies using these resources, we provide annotations for the predicted gene models-not only at gene level, by annotating gene models with the function of the best-matching homologue, and GO terms when available; but also at protein domain level, where gene function can be better verified through the conservation of the sequence and order of protein domains. Further, we provide an online platform (http://corallimorpharia.reefgenomics.org), which includes a blast interface and a genome browser to facilitate the use of these resources. We believe that these two genomes are important resources for future studies on hexacorallian systematics and the evolutionary basis of their specific traits such as the symbiotic relationship with dinoflagellates of the genus Symbiodinium or the evolution of calcification in reef-building corals.
© 2017 John Wiley & Sons Ltd.

Entities:  

Keywords:  zzm321990Amplexidiscus fenestraferzzm321990; Corallimorpharia; Discosoma sp.; naked corals

Mesh:

Year:  2017        PMID: 28407448     DOI: 10.1111/1755-0998.12680

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  11 in total

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Journal:  Sci Rep       Date:  2018-10-31       Impact factor: 4.379

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