Literature DB >> 28406206

A living mesoscopic cellular automaton made of skin scales.

Liana Manukyan1,2, Sophie A Montandon1, Anamarija Fofonjka1,2, Stanislav Smirnov3,4,5, Michel C Milinkovitch1,2.   

Abstract

In vertebrates, skin colour patterns emerge from nonlinear dynamical microscopic systems of cell interactions. Here we show that in ocellated lizards a quasi-hexagonal lattice of skin scales, rather than individual chromatophore cells, establishes a green and black labyrinthine pattern of skin colour. We analysed time series of lizard scale colour dynamics over four years of their development and demonstrate that this pattern is produced by a cellular automaton (a grid of elements whose states are iterated according to a set of rules based on the states of neighbouring elements) that dynamically computes the colour states of individual mesoscopic skin scales to produce the corresponding macroscopic colour pattern. Using numerical simulations and mathematical derivation, we identify how a discrete von Neumann cellular automaton emerges from a continuous Turing reaction-diffusion system. Skin thickness variation generated by three-dimensional morphogenesis of skin scales causes the underlying reaction-diffusion dynamics to separate into microscopic and mesoscopic spatial scales, the latter generating a cellular automaton. Our study indicates that cellular automata are not merely abstract computational systems, but can directly correspond to processes generated by biological evolution.

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Year:  2017        PMID: 28406206     DOI: 10.1038/nature22031

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  35 in total

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Journal:  Pigment Cell Melanoma Res       Date:  2012-07       Impact factor: 4.693

2.  Ultrastructure of the dermal chromatophores in a lizard (Scincidae: Plestiodon latiscutatus) with conspicuous body and tail coloration.

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Journal:  Zoolog Sci       Date:  2006-09       Impact factor: 0.931

3.  Pteridine, not carotenoid, pigments underlie the female-specific orange ornament of striped plateau lizards (Sceloporus virgatus).

Authors:  S L Weiss; K Foerster; J Hudon
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4.  Sympatric colour polymorphisms associated with nonrandom gene flow in cichlid fish of Lake Victoria.

Authors:  I S Magalhaes; S Mwaiko; O Seehausen
Journal:  Mol Ecol       Date:  2010-07-23       Impact factor: 6.185

Review 5.  Zebrafish stripes as a model for vertebrate colour pattern formation.

Authors:  Ajeet Pratap Singh; Christiane Nüsslein-Volhard
Journal:  Curr Biol       Date:  2015-01-19       Impact factor: 10.834

6.  How dewlap color reflects its carotenoid and pterin content in male and female brown anoles (Norops sagrei).

Authors:  John E Steffen; Kevin J McGraw
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2009-07-30       Impact factor: 2.231

7.  Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish.

Authors:  Hans Georg Frohnhöfer; Jana Krauss; Hans-Martin Maischein; Christiane Nüsslein-Volhard
Journal:  Development       Date:  2013-07       Impact factor: 6.868

8.  Gap junctions composed of connexins 41.8 and 39.4 are essential for colour pattern formation in zebrafish.

Authors:  Uwe Irion; Hans Georg Frohnhöfer; Jana Krauss; Tuǧba Çolak Champollion; Hans-Martin Maischein; Silke Geiger-Rudolph; Christian Weiler; Christiane Nüsslein-Volhard
Journal:  Elife       Date:  2014-12-23       Impact factor: 8.140

9.  Involvement of Delta/Notch signaling in zebrafish adult pigment stripe patterning.

Authors:  Hiroki Hamada; Masakatsu Watanabe; Hiu Eunice Lau; Tomoki Nishida; Toshiaki Hasegawa; David M Parichy; Shigeru Kondo
Journal:  Development       Date:  2013-12-04       Impact factor: 6.868

10.  Precise colocalization of interacting structural and pigmentary elements generates extensive color pattern variation in Phelsuma lizards.

Authors:  Suzanne V Saenko; Jérémie Teyssier; Dirk van der Marel; Michel C Milinkovitch
Journal:  BMC Biol       Date:  2013-10-07       Impact factor: 7.431

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  19 in total

1.  Developmental biology: How the lizard gets its speckled scales.

Authors:  Leah Edelstein-Keshet
Journal:  Nature       Date:  2017-04-12       Impact factor: 49.962

Review 2.  Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves.

Authors:  Albert Goldbeter
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2018-07-28       Impact factor: 4.226

3.  Tissue self-organization underlies morphogenesis of the notochord.

Authors:  James Norman; Emma L Sorrell; Yi Hu; Vaishnavi Siripurapu; Jamie Garcia; Jennifer Bagwell; Patrick Charbonneau; Sharon R Lubkin; Michel Bagnat
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-09-24       Impact factor: 6.237

4.  Self-organized criticality and pattern emergence through the lens of tropical geometry.

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Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-15       Impact factor: 11.205

Review 5.  Emergence of evolutionary driving forces in pattern-forming microbial populations.

Authors:  Jona Kayser; Carl F Schreck; QinQin Yu; Matti Gralka; Oskar Hallatschek
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-05-26       Impact factor: 6.237

6.  Stability selection enables robust learning of differential equations from limited noisy data.

Authors:  Suryanarayana Maddu; Bevan L Cheeseman; Ivo F Sbalzarini; Christian L Müller
Journal:  Proc Math Phys Eng Sci       Date:  2022-06-15       Impact factor: 3.213

Review 7.  From embryos to embryoids: How external signals and self-organization drive embryonic development.

Authors:  J Serrano Morales; Jelena Raspopovic; Luciano Marcon
Journal:  Stem Cell Reports       Date:  2021-05-11       Impact factor: 7.765

8.  Agent-Based Models Predict Emergent Behavior of Heterogeneous Cell Populations in Dynamic Microenvironments.

Authors:  Jessica S Yu; Neda Bagheri
Journal:  Front Bioeng Biotechnol       Date:  2020-06-11

9.  Ordered arrangement of dendrites within a C. elegans sensory nerve bundle.

Authors:  Zhiqi Candice Yip; Maxwell G Heiman
Journal:  Elife       Date:  2018-08-20       Impact factor: 8.140

10.  Elucidating the control and development of skin patterning in cuttlefish.

Authors:  Sam Reiter; Philipp Hülsdunk; Theodosia Woo; Marcel A Lauterbach; Jessica S Eberle; Leyla Anne Akay; Amber Longo; Jakob Meier-Credo; Friedrich Kretschmer; Julian D Langer; Matthias Kaschube; Gilles Laurent
Journal:  Nature       Date:  2018-10-17       Impact factor: 49.962

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