| Literature DB >> 28386217 |
McKenzie L Ritter1, Wei Guo1, Jack F Samuels2, Ying Wang2, Paul S Nestadt3, Janice Krasnow2, Benjamin D Greenberg4, Abby J Fyer5, James T McCracken6, Daniel A Geller7, Dennis L Murphy8, James A Knowles9, Marco A Grados2, Mark A Riddle2, Steven A Rasmussen4, Nicole C McLaughlin4, Erika L Nurmi6, Kathleen D Askland4, Bernadette Cullen2, John Piacentini6, David L Pauls7, Joseph Bienvenu2, Evelyn Stewart10, Fernando S Goes2, Brion Maher3, Ann E Pulver2, Manuel Mattheisen11, Ji Qian12, Gerald Nestadt2, Yin Yao Shugart1.
Abstract
Objective: The aim of this study was to identify any potential genetic overlap between attention deficit hyperactivity disorder (ADHD) and obsessive compulsive disorder (OCD). We hypothesized that since these disorders share a sub-phenotype, they may share common risk alleles. In this manuscript, we report the overlap found between these two disorders.Entities:
Keywords: ADHD; GWAS; OCD; eQTL; meta-analysis; polygenic score; protein-protein link analysis
Year: 2017 PMID: 28386217 PMCID: PMC5362635 DOI: 10.3389/fnmol.2017.00083
Source DB: PubMed Journal: Front Mol Neurosci ISSN: 1662-5099 Impact factor: 5.639
Figure 1Quantile-quantile (QQ) plot for QQ plots compare the observed vs. expected test-statistic distributions. The shading indicates the 95% confidence intervals. The inflation factor, λ is 1.008.
Figure 2Manhattan plot of all the genotyped and imputed SNPs for .
Top SNPs from the meta-analysis.
| Chr | SNP | Position | A1/A2 | Gene name | Direction | |
|---|---|---|---|---|---|---|
| 9 | rs10989904 | 104030215 | T/G | 1.65E-04 | −− | |
| 14 | rs234601 | 96146269 | T/C | 2.12E-04 | −− | |
| 17 | rs11656215 | 17393792 | T/C | PEMT | 4.25E-04 | −− |
| 1 | rs708723 | 204005889 | T/C | RAB29, NUCKS1, SLC41A1, SLC45A3 | 4.52E-04 | ++ |
| 15 | rs7167122 | 58162157 | T/C | 5.48E-04 | −− | |
| 19 | rs375323 | 11247225 | T/C | DOCK6 | 6.94E-04 | −− |
| 17 | rs1901187 | 35899673 | T/C | TNS4 | 8.59E-04 | ++ |
| 4 | rs4557213 | 177926127 | A/G | VEGF-C | 9.18E-04 | ++ |
| 17 | rs4073996 | 75056346 | T/C | 9.33E-04 | −− | |
| 11 | rs2656198 | 98868897 | A/G | 1.11E-03 | −− |
Chr, chromosome; SNP, single nucleotide polymorphism; Position, chromosome positions at hg19, A1, reference allele, A2, alternative allele, GeneName, genes including SNPs, P-value, meta-analysis p-value, Direction, summary of the effect of the direction for each study.
Figure 3PRSice bar plot for linkage disequilibrium (LD) threshold of 0.1. The tallest bar indicates the best fit polygenic risk score (PRS) for the ADHD PRS predicting OCD.
Figure 4Protein-Protein interaction network built from proteins from the SNPs from the meta-analysis. The colored circles represent the proteins and the different colors are associated with different regions. The gray lines represent the direct connections between the proteins.
Results of the protein-protein link evaluation in Disease Association Protein-Protein Link Evaluator (DAPPLE), direct interactions.
| Protein | Region | Uncorrected | Corrected | Binding protein/s | Function |
|---|---|---|---|---|---|
| FGF10 | G70 | 0.00199 | 0.00199 | FGFR2 | Fibroblast growth factor 10 |
| FGF10, UQCC, | |||||
| FGFR2 | G75 | 0.01394 | 0.01394 | CHMP4B | Fibroblast growth factor receptor 2 |
| UQCC | G13 | 0.08598 | 0.08598 | FGFR2 | Assembly factor 1 |
| EIF3I | G81 | 0.11629 | 0.11629 | EIF2S2 | Eukaryotic translation initiation factor 3 |
| SELE | G59 | 0.11629 | 0.11629 | SELL | Selectin E |
| EIF2S2 | G58 | 0.16079 | 0.16079 | EIF3I | Eukaryotic translation initiation factor 2 |
| SELL | G36 | 0.15529 | 0.15529 | SELE | Selectin L |
| CHMP4B | G94 | 0.18442 | 0.18442 | FGFR2 | Charged multivesicular body protein 4A |
| PIK3C2B | G25 | 0.16444 | 0.16444 | ITCH | Phosphatidylinositol-4-phosphate 3-kinase |
| ITCH | G60 | 0.24461 | 0.24461 | PIK3C2B | Itchy E3 ubiquitin protein ligase |
The p-values are the probability that by chance the individual interactions would be connected to the seed proteins as observed in the network (Figure .
Results of the expression quantitative trait locus (eQTL) analysis in eEQLAnalysis, top genes.
| Gene name | Chromosome number | eQTL | Permutation |
|---|---|---|---|
| LINC00314 | 21 | 1.481E-08 | 0.0039 |
| CXCR2 | 2 | 5.934E-08 | 0.0029 |
| ASB17 | 1 | 6.149E-07 | 0.0088 |
| SELE | 1 | 6.581E-07 | 0.0000 |
| ACOT7 | 1 | 8.591E-07 | 0.0003 |
| PRPS1L1 | 7 | 1.324E-06 | 0.0004 |
| ZBF580 | 19 | 1.431E-06 | 0.0027 |
| TAS2R41 | 7 | 1.663E-06 | 0.0049 |
| ADAMTS20 | 12 | 1.710E-06 | 0.0027 |
| WDFY3 | 4 | 2.136E-06 | 0.0041 |