Literature DB >> 28381442

Traversing the RNA world.

Witold Filipowicz1.   

Abstract

An invitation to write a "Reflections" type of article creates a certain ambivalence: it is a great honor, but it also infers the end of your professional career. Before you vanish for good, your colleagues look forward to an interesting but entertaining account of the ups-and-downs of your past research and your views on science in general, peppered with indiscrete anecdotes about your former competitors and collaborators. What follows will disappoint those who await complaint and criticism, for example, about the difficulties of doing research in the 1960s and 1970s in Eastern Europe, or those seeking very personal revelations. My scientific life has in fact seen many happy coincidences, much good fortune, and several lucky escapes from situations that at the time were quite scary. I have also been fortunate with regard to competitors and collaborators, particularly because, whenever possible, I tried to "neutralize" my rivals by collaborating with them - to the benefit of all. I recommend this strategy to young researchers to dispel the nightmares that can occur when competing against powerful contenders. I have been blessed with the selection of my research topic: RNA biology. Over the last five decades, new and unexpected RNA-related phenomena emerged almost yearly. I experienced them very personally while studying transcription, translation, RNA splicing, ribosome biogenesis, and more recently, different classes of regulatory non-coding RNAs, including microRNAs. Some selected research and para-research stories, also covering many wonderful people I had a privilege to work with, are summarized below.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Dicer; RNA; RNA interference (RNAi); RNA modification; RNA splicing; mRNA; translation

Mesh:

Substances:

Year:  2017        PMID: 28381442      PMCID: PMC5437222          DOI: 10.1074/jbc.X117.789065

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  105 in total

Review 1.  The widespread regulation of microRNA biogenesis, function and decay.

Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

2.  Structural basis for double-stranded RNA processing by Dicer.

Authors:  Ian J Macrae; Kaihong Zhou; Fei Li; Adrian Repic; Angela N Brooks; W Zacheus Cande; Paul D Adams; Jennifer A Doudna
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

3.  Sequences containing methylated nucleotides at the 5' termini of messenger RNAs: possible implications for processing.

Authors:  F Rottman; A J Shatkin; R P Perry
Journal:  Cell       Date:  1974-11       Impact factor: 41.582

4.  Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease.

Authors:  C L Peebles; P Gegenheimer; J Abelson
Journal:  Cell       Date:  1983-02       Impact factor: 41.582

5.  Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis.

Authors:  E Billy; T Wegierski; F Nasr; W Filipowicz
Journal:  EMBO J       Date:  2000-05-02       Impact factor: 11.598

6.  Kinetic analysis reveals successive steps leading to miRNA-mediated silencing in mammalian cells.

Authors:  Julien Béthune; Caroline G Artus-Revel; Witold Filipowicz
Journal:  EMBO Rep       Date:  2012-06-08       Impact factor: 8.807

7.  5'-Terminal 7-methylguanosine and mRNA function. The effect of enzymatic decapping and of cap analogs on translation of tobacco-mosaic-virus RNA and globin mRNA in vitro.

Authors:  A Wodnar-Filipowicz; E Szczesna; M Zan-Kowalczewska; S Muthukrishnan; U Szybiak; A B Legocki; W Filipowicz
Journal:  Eur J Biochem       Date:  1978-12-01

8.  Interferon modulation of cellular microRNAs as an antiviral mechanism.

Authors:  Irene M Pedersen; Guofeng Cheng; Stefan Wieland; Stefano Volinia; Carlo M Croce; Francis V Chisari; Michael David
Journal:  Nature       Date:  2007-10-18       Impact factor: 49.962

9.  The long unfinished march towards understanding microRNA-mediated repression.

Authors:  Witold Filipowicz; Nahum Sonenberg
Journal:  RNA       Date:  2015-04       Impact factor: 4.942

10.  Regulation of axon regeneration by the RNA repair and splicing pathway.

Authors:  Yuanquan Song; David Sretavan; Ernesto A Salegio; Jim Berg; Xi Huang; Tong Cheng; Xin Xiong; Shan Meltzer; Chun Han; Trong-Tuong Nguyen; Jacqueline C Bresnahan; Michael S Beattie; Lily Yeh Jan; Yuh Nung Jan
Journal:  Nat Neurosci       Date:  2015-05-11       Impact factor: 24.884

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  1 in total

1.  Exploration of RNA Sequence Space in the Absence of a Replicase.

Authors:  Madhan R Tirumalai; Quyen Tran; Maxim Paci; Dimple Chavan; Anuradha Marathe; George E Fox
Journal:  J Mol Evol       Date:  2018-05-11       Impact factor: 2.395

  1 in total

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