Literature DB >> 28379472

A Novel Prosthetic Joint Infection Pathogen, Mycoplasma salivarium, Identified by Metagenomic Shotgun Sequencing.

Matthew Thoendel1, Patricio Jeraldo2, Kerryl E Greenwood-Quaintance3, Nicholas Chia2, Matthew P Abdel4, James M Steckelberg1, Douglas R Osmon1, Robin Patel1,3.   

Abstract

Defining the microbial etiology of culture-negative prosthetic joint infection (PJI) can be challenging. Metagenomic shotgun sequencing is a new tool to identify organisms undetected by conventional methods. We present a case where metagenomics was used to identify Mycoplasma salivarium as a novel PJI pathogen in a patient with hypogammaglobulinemia.
© The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Mycoplasma; metagenomics; prosthetic joint infection

Mesh：

Year:  2017        PMID： 28379472      PMCID： PMC5848249          DOI： 10.1093/cid/cix296

Source DB:  PubMed          Journal:  Clin Infect Dis        ISSN： 1058-4838            Impact factor:   9.079


  10 in total

1.  Mycoplasma pneumoniae periprosthetic joint infection identified by 16S ribosomal RNA gene amplification and sequencing: a case report.

Authors:  Zhuolin Han; Carey-Ann D Burnham; John Clohisy; Hilary Babcock
Journal:  J Bone Joint Surg Am       Date:  2011-09-21       Impact factor: 5.284

2.  Prosthetic joint infection diagnosis using broad-range PCR of biofilms dislodged from knee and hip arthroplasty surfaces using sonication.

Authors:  Eric Gomez; Charles Cazanave; Scott A Cunningham; Kerryl E Greenwood-Quaintance; James M Steckelberg; James R Uhl; Arlen D Hanssen; Melissa J Karau; Suzannah M Schmidt; Douglas R Osmon; Elie F Berbari; Jayawant Mandrekar; Robin Patel
Journal:  J Clin Microbiol       Date:  2012-08-15       Impact factor: 5.948

3.  Prosthetic joint infection with Mycoplasma hominis.

Authors:  M Sneller; F Wellborne; M F Barile; P Plotz
Journal:  J Infect Dis       Date:  1986-01       Impact factor: 5.226

4.  Arthritis caused by Mycoplasma salivarium in hypogammaglobulinaemia.

Authors:  A K So; P M Furr; D Taylor-Robinson; A D Webster
Journal:  Br Med J (Clin Res Ed)       Date:  1983-03-05

5.  Mycoplasma salivarium isolated from brain abscesses.

Authors:  I Ørsted; J B Gertsen; H C Schønheyder; J S Jensen; H Nielsen
Journal:  Clin Microbiol Infect       Date:  2011-03-01       Impact factor: 8.067

6.  Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing.

Authors:  Matthew Thoendel; Patricio R Jeraldo; Kerryl E Greenwood-Quaintance; Janet Z Yao; Nicholas Chia; Arlen D Hanssen; Matthew P Abdel; Robin Patel
Journal:  J Microbiol Methods       Date:  2016-05-26       Impact factor: 2.363

7.  Empyema caused by Mycoplasma salivarium.

Authors:  Rafael Baracaldo; Michael Foltzer; Robin Patel; Paul Bourbeau
Journal:  J Clin Microbiol       Date:  2012-02-15       Impact factor: 5.948

8.  Common variable immunodeficiency presenting as a Mycoplasma hominis septic arthritis.

Authors:  A Steuer; A Franz; P M Furr; D Taylor-Robinson; A D Webster; G R Hughes
Journal:  J Infect       Date:  1996-11       Impact factor: 6.072

9.  Scalable metagenomic taxonomy classification using a reference genome database.

Authors:  Sasha K Ames; David A Hysom; Shea N Gardner; G Scott Lloyd; Maya B Gokhale; Jonathan E Allen
Journal:  Bioinformatics       Date:  2013-07-04       Impact factor: 6.937

Review 10.  Mycoplasma pneumoniae: Current Knowledge on Macrolide Resistance and Treatment.

Authors:  Sabine Pereyre; Julien Goret; Cécile Bébéar
Journal:  Front Microbiol       Date:  2016-06-22       Impact factor: 5.640
  10 in total
  26 in total

1.  Impact of Contaminating DNA in Whole-Genome Amplification Kits Used for Metagenomic Shotgun Sequencing for Infection Diagnosis.

Authors:  Matthew Thoendel; Patricio Jeraldo; Kerryl E Greenwood-Quaintance; Janet Yao; Nicholas Chia; Arlen D Hanssen; Matthew P Abdel; Robin Patel
Journal:  J Clin Microbiol       Date:  2017-03-29       Impact factor: 5.948

2.  Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.

Authors:  Qun Yan; Yu Mi Wi; Matthew J Thoendel; Yash S Raval; Kerryl E Greenwood-Quaintance; Matthew P Abdel; Patricio R Jeraldo; Nicholas Chia; Robin Patel
Journal:  J Clin Microbiol       Date:  2019-01-30       Impact factor: 5.948

3.  Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing.

Authors:  Morgan I Ivy; Matthew J Thoendel; Patricio R Jeraldo; Kerryl E Greenwood-Quaintance; Arlen D Hanssen; Matthew P Abdel; Nicholas Chia; Janet Z Yao; Aaron J Tande; Jayawant N Mandrekar; Robin Patel
Journal:  J Clin Microbiol       Date:  2018-08-27       Impact factor: 5.948

4.  Metagenomics for Clinical Infectious Disease Diagnostics Steps Closer to Reality.

Authors:  John P Dekker
Journal:  J Clin Microbiol       Date:  2018-08-27       Impact factor: 5.948

Review 5.  Current Recommendations for the Diagnosis of Acute and Chronic PJI for Hip and Knee-Cell Counts, Alpha-Defensin, Leukocyte Esterase, Next-generation Sequencing.

Authors:  Karan Goswami; Javad Parvizi; P Maxwell Courtney
Journal:  Curr Rev Musculoskelet Med       Date:  2018-09

Review 6.  From the Pipeline to the Bedside: Advances and Challenges in Clinical Metagenomics.

Authors:  Augusto Dulanto Chiang; John P Dekker
Journal:  J Infect Dis       Date:  2020-03-28       Impact factor: 5.226

7.  Comparison of culture and broad-range polymerase chain reaction methods for diagnosing periprosthetic joint infection: analysis of joint fluid, periprosthetic tissue, and sonicated fluid.

Authors:  Zida Huang; Qiqiao Wu; Xinyu Fang; Wenbo Li; Chaofan Zhang; Huiyi Zeng; Qijin Wang; Jianhua Lin; Wenming Zhang
Journal:  Int Orthop       Date:  2018-02-11       Impact factor: 3.075

8.  Comparison of Diagnostic Accuracy of Periprosthetic Tissue Culture in Blood Culture Bottles to That of Prosthesis Sonication Fluid Culture for Diagnosis of Prosthetic Joint Infection (PJI) by Use of Bayesian Latent Class Modeling and IDSA PJI Criteria for Classification.

Authors:  Qun Yan; Melissa J Karau; Kerryl E Greenwood-Quaintance; Jayawant N Mandrekar; Douglas R Osmon; Matthew P Abdel; Robin Patel
Journal:  J Clin Microbiol       Date:  2018-05-25       Impact factor: 5.948

9.  Identification of Prosthetic Joint Infection Pathogens Using a Shotgun Metagenomics Approach.

Authors:  Matthew J Thoendel; Patricio R Jeraldo; Kerryl E Greenwood-Quaintance; Janet Z Yao; Nicholas Chia; Arlen D Hanssen; Matthew P Abdel; Robin Patel
Journal:  Clin Infect Dis       Date:  2018-10-15       Impact factor: 9.079

Review 10.  [Clinical implications of the genus Mycoplasma].

Authors:  D Gómez Rufo; E García Sánchez; J E García Sánchez; M García Moro
Journal:  Rev Esp Quimioter       Date:  2021-03-18       Impact factor: 1.553
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